Leguminivora glycinivorella (soybean pod borer): 125232554
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Entry
125232554 CDS
T09956
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
lgly
Leguminivora glycinivorella (soybean pod borer)
Pathway
lgly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lgly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125232554
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgly03019
]
125232554
Enzymes [BR:
lgly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125232554
Messenger RNA biogenesis [BR:
lgly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125232554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
MMR_HSR1
AAA_10
nSTAND3
AAA_21
AAA_24
RsgA_GTPase
ATP_bind_1
AAA_35
Motif
Other DBs
NCBI-GeneID:
125232554
NCBI-ProteinID:
XP_047994222
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All DBs
Position
13:complement(21056962..21064854)
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AA seq
420 aa
AA seq
DB search
MTEVQLQEFKLEPDSELRFEVESKNEKVVLEIKSGYAELFGTELVKGKPYEFHTGAKVAV
FTWHGCTVELRGRTEVSYVAKETPMVVYLNVHAALEQQRVAAEQENTRGPVTMIVGPGDV
GKSTLTRILLNYAVRMGRRPIYVDLDVGQGQISVPGTIGALLVERPASIEEGFSQQAPLV
YHFGHKSPSENLELYNTIVSRLAEVIAERCENNKKASTSGVIINTCGWIKGAGYKMLTHA
AQAFEVDVILVLDNERLYNELKRDMPKFVKVVYLPKSGGVVERSSQARVEVRDCRIREYF
YGKRTPYYPHSFDVKFQDLKIYKVGAPSLPDSCMPLGMRAEDALTKLVAVTVTPALAHRL
LAVTFAAGPDDDAPCSNLAGIVCVTAVDMDRQMLTILSPQPRPLPNTVLLLSELQYMDNH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgactgaagttcaactacaggagttcaaattagagcccgattctgagcttcgtttcgaa
gtcgaatccaagaacgagaaagttgttttggagataaaaagcggttacgccgagctgttt
ggcacagagctagtcaaaggaaagccatatgagttccatacgggtgccaaagttgccgtg
ttcacgtggcacggctgcacggtggagctgcgaggcaggaccgaagtcagctacgtagct
aaagagactcccatggtggtctacctaaacgtccatgcagcattagagcagcagcgagta
gcagcagaacaggagaacacccgaggccccgtcaccatgattgtggggcccggagacgtc
gggaaatccacactcactaggatactgcttaactacgctgtgaggatgggccggagaccg
atatatgtagacttggatgtaggacaggggcagattagtgttccggggactattggagcc
ttattagtggagcgaccagcatcaatagaagaaggtttcagtcagcaggcacctctagta
taccactttggccacaaatcaccttcggaaaacttggagctgtacaacaccattgtatcg
aggctcgctgaggtcattgctgagagatgtgagaataataaaaaagcatcaacgtcaggc
gtgatcatcaatacgtgtggctggatcaagggcgccggctacaagatgctaacgcatgcc
gctcaggcgttcgaggtggatgtcatattagtattggacaacgagagattgtacaacgag
ctcaagagagacatgccaaagtttgtcaaagtcgtgtacttaccaaagagtggtggggtg
gtggaacgatcgagccaggctcgcgtcgaggtccgcgactgtcgcatccgagagtacttc
tacggcaaacgcacgccgtactaccctcactcgttcgacgtcaagttccaggatctcaag
atatacaaggtgggcgccccatcgttaccagactcctgcatgccgctcggcatgcgcgcc
gaagacgccctcaccaaactggtcgcagtgaccgtgacgcccgcgctggcgcaccgcctg
ctggccgtgacgttcgccgccggccccgacgacgacgcgccctgctctaacctagccggg
atcgtgtgtgtgaccgcggtggatatggaccggcagatgctgaccatcctctctccgcag
ccgcggcctctcccaaacactgtcctcctgctctcagaactgcagtacatggacaaccat
taa
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