Lysinibacillus varians: T479_07340
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Entry
T479_07340 CDS
T03062
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lgy
Lysinibacillus varians
Pathway
lgy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lgy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
T479_07340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lgy03019
]
T479_07340
03400 DNA repair and recombination proteins [BR:
lgy03400
]
T479_07340
Enzymes [BR:
lgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
T479_07340
Messenger RNA biogenesis [BR:
lgy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
T479_07340
DNA repair and recombination proteins [BR:
lgy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
T479_07340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
DEAD_2
AAA_22
DUF5637
Motif
Other DBs
NCBI-ProteinID:
AHN21273
UniProt:
A0A806LP01
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All DBs
Position
1550969..1552411
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AA seq
480 aa
AA seq
DB search
MELEQTLAKYFGYATFRPGQKEVIEAILSGKDVIALLPTGMGKSLCYQLPAYLLQKPVLI
VSPLLSLMQDQVEQLKRFGEKRVVALNSFLTVEEKRYALHFLEQYRFIFTSPEMLLQQQV
QEKLANMTLSLIVVDEAHCISQWGFDFRPDYLRIGDWFSQGNRPPVLALSATATEKVVKD
IHATLSLHAPFEFMYNVDRPNIHLGRVLFEDRGDKARWIVEHVKKTAGPGILYLSSRKRA
EQYCELFMQAGLRAAAYHAGYSAEDRQFIQQQFIDGELDWIVATNAFGMGINKGDIRQVI
HETMPANVANYMQEIGRAGRDGKPALAILLYSDGDEELAKFVVTGDLPSSSHVDRYQELV
LQRIAPSQMLKNGELSETAFRVLDYWLHQEPEERVKARLRHFALEKYQAVDEMLKIIKTK
DCLREQLIGYFGQKLKKKPENCCENCGIHYDEINTVRMKEEKKVEMMAWESRLKQLLISD
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggaactagagcaaacattagcaaaatatttcggttatgccacctttcgaccagggcaa
aaagaggtaattgaagcaattcttagcgggaaagatgttattgcattattgccaacaggc
atgggtaaatcattgtgctatcagttgcccgcttatttattgcaaaaaccagtgttaata
gtgtctccgctattgtctttaatgcaagatcaagtagagcaactgaagcgatttggtgaa
aaaagggtagtagcattaaattcatttttaacagtagaagaaaaacgatatgctctccat
tttttagaacagtatcgctttattttcacatcgccggagatgttgttacaacaacaggta
caggagaagttagcaaatatgacgttaagtcttatcgttgtagatgaagcacattgtatc
tcgcagtggggatttgattttcgtccggattatttgcgcatcggcgactggttttcacaa
ggtaatcgtccccctgtattagcgttgtctgcgactgcaactgaaaaagtagtaaaagat
attcatgctacactatcactgcatgcaccgtttgaatttatgtataatgttgatcgtcca
aatattcacctcggacgtgttcttttcgaggataggggcgataaagcaagatggatagtg
gagcatgtaaaaaaaaccgctggaccaggtattttatatttgtcatcacgcaagcgtgct
gagcaatattgtgaactgtttatgcaagcgggtttgcgagctgccgcatatcatgcaggc
tatagtgcggaggatcgtcaatttattcaacagcagtttatcgatggagagttagattgg
attgtggcgaccaatgcgtttggtatgggcattaataagggagatattcgacaggtgata
catgagacaatgcctgccaatgttgcgaattatatgcaagaaattgggcgcgcaggtcgt
gatggtaaacctgctcttgcgattttactttacagcgatggtgacgaggaactggcgaaa
tttgtagtaacaggagatttaccgtcatctagtcatgtcgatcgctatcaagagcttgta
ttgcagcgtattgccccctctcaaatgttaaaaaatggtgagttgagtgaaacagccttt
cgtgtgctagattattggctccatcaggaacctgaagaacgagtaaaagcacgacttcgt
cattttgcacttgaaaaatatcaggcagtggatgaaatgttaaaaattataaagacaaaa
gattgtttgcgcgagcaacttatcgggtattttgggcaaaaattgaagaaaaaacctgaa
aactgttgtgaaaattgtggaatccattatgatgaaatcaatacagtacgcatgaaggaa
gagaagaaagtagaaatgatggcgtgggaaagtcgattaaaacagcttttaataagcgac
tag
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