Lentilactobacillus hilgardii: G8J22_00663
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Entry
G8J22_00663 CDS
T06851
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lhil
Lentilactobacillus hilgardii
Pathway
lhil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G8J22_00663 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhil03019
]
G8J22_00663 (dbpA)
03400 DNA repair and recombination proteins [BR:
lhil03400
]
G8J22_00663 (dbpA)
Enzymes [BR:
lhil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G8J22_00663 (dbpA)
Messenger RNA biogenesis [BR:
lhil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G8J22_00663 (dbpA)
DNA repair and recombination proteins [BR:
lhil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
G8J22_00663 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
CAP18_C
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
QIR08729
LinkDB
All DBs
Position
692178..693581
Genome browser
AA seq
467 aa
AA seq
DB search
MDIRHISQSKIIDDVLTQVSLARNKGKAYYDLVVTAPTGSGKSLFFQIPGIVLHKEYREI
TIVITPLQALMKDQADGLSSRGIDFATYINSQISLEERNRRLRKIKNGKYSILYVSPELL
LDSKIDKLIGNRRIGLFVVDEAHLVTSWGRDFRVDYWFLGDYLNKLRNGSYYSKTVKRDF
PILILTATAVLGGKNDQIGTLIEDLNLRVDENKHMYIGKVRRDQIEFQIHQVEKSEGNTK
EDKIEKVVDRIKEFVYKDIKTIIYCPYSSQCATLMLNLRATDEKVRNKIAYYYGSMSSDQ
KVQNYTSFKNGESTIMIATTAFGMGIDIDDIQAVYHLAPTGGLSEYVQEIGRAARKLDRG
YAITDFFKNDLHYARTLWGLGGIRQYQLREIAMQLSNLSQNNKTRNLLVSPESFGHLFDT
GDVDQKVKSGLMLLTTDLEERYHFKVITIKNVHSPVYPSIWWHFRTN
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgccatatctcccaaagcaaaatcattgatgacgttttgactcaagtgagt
ttagctcgtaacaaagggaaagcatattatgatttagttgtcactgcaccaactggttca
ggtaaatctttattttttcaaataccaggcattgtccttcataaggaatatagggaaatc
acgattgttatcacccctcttcaagccttaatgaaggatcaagccgatggattatcaagt
cggggaattgattttgcaacttacatcaattcccaaatatctcttgaggaacggaatcgg
cgccttcgtaaaattaagaatggaaaatattccattctttacgtatcaccagaattattg
ctggattcaaaaatcgataagttgattggcaatcgacgtattggtttatttgtcgtcgat
gaggctcatttagtaacctcatggggacgagactttcgtgtggattattggttcctcggt
gactatcttaataagcttcgtaatggcagttattatagtaaaacagtgaaacgtgatttc
cctattttgattttaactgccacggctgttttgggtggtaagaatgaccaaattggaact
ttaattgaagatttaaatttgcgagttgacgaaaacaaacatatgtatattggaaaagtt
cgtcgagatcaaattgaatttcagattcaccaggttgaaaaatcagaaggaaacacaaaa
gaagacaagattgaaaaagtagtcgaccgaattaaggagtttgtttataaagacattaaa
accattatctattgtccatatagtagccaatgtgctaccttaatgttgaatttacgggcg
actgacgagaaagttagaaataaaattgcttattattatggcagtatgtcctcagatcaa
aaagtccaaaattatactagctttaaaaacggtgagtcaacaattatgattgcgactaca
gcttttggcatggggattgatattgatgatattcaggcagtatatcatttagcgccgact
ggtggattatcggaatatgtgcaggaaatcggtcgtgccgctcgaaagctagatcgagga
tacgctattactgatttctttaagaatgatctgcattatgcacggacgctttggggactt
ggcggtattcgtcaatatcaattacgtgagattgctatgcagttgagcaatttatcgcaa
aataataaaacaagaaacttattggtttcgccagaatcatttgggcatttatttgataca
ggtgatgtagatcaaaaagttaaaagcgggttgatgcttttaacaaccgatcttgaagaa
cgttatcattttaaagtgattacaattaagaatgtacactcgccagtttatccaagcatc
tggtggcactttagaacaaattaa
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