Lactobacillus helveticus H10: LBHH_0270
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Entry
LBHH_0270 CDS
T01959
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lhl
Lactobacillus helveticus H10
Pathway
lhl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lhl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBHH_0270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lhl03021
]
LBHH_0270 (rpoB)
03400 DNA repair and recombination proteins [BR:
lhl03400
]
LBHH_0270 (rpoB)
Enzymes [BR:
lhl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBHH_0270 (rpoB)
Transcription machinery [BR:
lhl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBHH_0270 (rpoB)
DNA repair and recombination proteins [BR:
lhl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBHH_0270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADX69502
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All DBs
Position
292424..296065
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AA seq
1213 aa
AA seq
DB search
MLNGHVVNYGKHRTRRSFSRIKEVLKLPNLTDVQTESYKWFLDKGIKEVFDDIMPISDFS
GKLSLEYEGYKLQKPKYTVDEARDHDATYAAPMHVTLKLTNQETGEIKTQDVFFGDLPLM
TESGSFIVNGAERVIVSQLVRSPGVYYTGDYDKNGRQIFGTTVIPNRGAWLEYETDAKNV
SFVRVDRTRKLPLTVLIRAMGIGSDSDIIDMFGQSDTLQFTLDKDVHKNPADSRVAEALK
DIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLYGQTLAETL
ADPDTGEIIAKKDTVVTHEVMDKLAPYLDRDDFKMVTYQPSKEGVLPDPITVQEIKVYSK
VDPEREVKLMSNGHIAADVKHLTPADVLASINYFFALQDKIGTTDDIDHLGNRRIRRVGE
LLQNQFRIGLARMERVVRERMSIQDPSTVTPQQLINIRPIVASIKEFFGSSQLSQFMDQH
NPLGELTHKRRMSALGPGGLTRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLASY
AIINKYGFIETPYRRVSWKTHKVTDKIDYLTADEEDNYIIAGANTPLNDDGSFKSDVILA
RQKEDNVEVTPDKIDYMDVIPKQVVSVASACIPFLENDDSNRALMGANQQRQAEPLINPH
GSLVGTGMEYRAAHDSGAALIAKAAGTVEYVDANEIRIRREDGTLDKYTLEKYRRSNNSK
SYNQTPNVKLGDHVDVSDVIANGPTMDHGELALGQNPLIAFMTWNMYNYEDAIMLSERLV
KDDVYTSISIEDYESEARDTKLGPEEITRELPNIGEDALKDLDADGIVRVGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKAHEVRDTSLRVPHGGGGIVQDVKVYTREAGDELS
PGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVAAVVPEEDMPYLPDGTPVDICLNPMGV
PSRMNIGQLLELHLGAAARQLGIHVATPVFDGANENDVWDTVRQAGIDKDGKTVIYDGRT
GEPFHNRVSVGVMHYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDI
RVLDMNHNEIELRDMDEDSSEHLNIDSLSRMAEEQEKKKLAEETGKSEDKKENKKDADKP
VAPADESDDKVSK
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
ttgttaaatggacacgtagtgaactacggtaaacatcgaactagacgtagcttctctcgc
attaaagaagtattgaagcttcctaacttaactgatgttcaaaccgaatcatataagtgg
tttcttgataaaggcattaaagaagtttttgatgacattatgcctattagtgacttctca
ggtaagctttcattagaatatgaaggctacaagcttcaaaagcctaaatatacagttgat
gaagctcgtgatcacgatgcaacttatgctgcaccaatgcacgtaaccttaaagcttact
aaccaagaaactggtgaaattaagactcaagatgtattctttggcgatttaccattgatg
accgaatcaggttcattcattgttaatggtgctgaaagagttattgtttctcaattagta
agatctccaggtgtgtactacactggtgattacgacaagaatggtcgtcaaatctttggt
actacagttattcctaaccgtggtgcttggcttgaatatgaaactgatgctaagaatgtt
tcatttgttcgtgtagaccgtactcgtaagttgccacttactgtattgattagagctatg
ggtatcggctctgatagtgacatcatcgacatgtttggtcaaagcgatactttacaattt
actttggacaaagatgttcacaagaatccagcagattctcgtgtagctgaagccttaaag
gatatttacgaaagattacgtccaggtgaacctaagacaactgattcatcacgttcactt
ttgtatgctcgtttctttgacccacgtcgttacgacttggcaccagttgggcgttacaag
attaacaagaagctttcacttaagaaccgtttatacggtcaaactttagctgaaactttg
gctgatccagatactggtgaaatcattgctaagaaggatactgttgttactcacgaagta
atggacaagttagctccataccttgatcgtgatgactttaagatggtaacttaccaacct
tcaaaggaaggcgtattaccagatcctattacagttcaagaaattaaggtttactcaaag
gtagatcctgaacgtgaagttaaattaatgtcaaatggtcatattgctgcagatgttaag
cacttaactccagcagatgttttggcatcaattaactacttctttgctttacaagacaag
attggtaccactgatgatatcgaccacttgggtaaccgtcgtattcgtcgtgttggtgaa
cttcttcaaaaccaatttagaattggtttagcaagaatggaacgtgttgttcgtgaaaga
atgtcaatccaagatccttcaaccgttactccacaacaattgatcaatattcgtccaatt
gttgcaagtatcaaggaattcttcggttcatcacaactttcacaatttatggaccaacac
aacccattaggtgaattgactcacaagcgtcgtatgtcagccttagggcctggtggtttg
actcgtgaccgtgctggttatgaagttcgtgacgttcactatactcactatggtcgtttg
tgtcctatcgaaactccagaaggtcctaacattggtttgatcaactcacttgcttcatac
gcaattattaacaagtatggtttcattgaaactccataccgtcgtgtatcttggaagact
cacaaggttactgataagatcgactacttaactgctgatgaagaagataattacatcatt
gccggtgcaaacactcctttgaatgacgatggttcatttaagagtgatgtgatcttagct
cgtcaaaaggaagataacgtcgaagttactcctgataagattgactacatggacgttatt
cctaagcaagttgtttctgtagcttcagcatgtattccattccttgaaaacgatgactct
aaccgtgctttgatgggtgccaaccagcaacgtcaggctgaacctttgatcaacccacat
ggttcacttgttggtactggtatggaatatcgtgccgcccacgattcaggtgctgcttta
attgctaaggctgctggtactgttgaatacgtagatgcaaatgaaatccgtatcagacgt
gaagatggtactttagacaagtacactcttgaaaaataccgtcgttcaaacaactctaag
tcatacaaccaaactcctaatgttaaattaggtgatcatgttgacgtaagtgatgttatt
gctaacggtccaactatggatcacggtgaacttgctttaggtcaaaacccacttatcgct
ttcatgacctggaacatgtacaactacgaagatgccatcatgctttcagaacgtttagtt
aaggatgatgtttacacttcaattagtattgaagactacgaatcagaagctcgtgacact
aagcttggccctgaagaaattactagagaacttcctaacatcggtgaagatgctttgaag
gatcttgatgctgacggtattgtacgtgtcggtgctgaagttcacgatggtgatattttg
gtaggtaaggtaactcctaagggtgtaactgaattatctgctgaagaaagattacttcac
gcaatctttggtgaaaaggctcatgaagttcgtgatacttcacttcgtgtaccacacggt
ggtggcggtatcgttcaagacgttaaggtttatactcgtgaagccggcgatgaactttca
ccaggtgttaacactatggttcgtgtttacattgcacaaaagagaaagattcaagttggg
gacaagatgtctggtcgtcacggtaacaagggtactgttgctgctgttgtaccagaagaa
gatatgccatacttaccagatggtactccagtagacatttgtttgaacccaatgggtgtt
ccatcacgtatgaacatcggacagcttcttgaattacacttgggtgcagcagcacgtcaa
ttaggtattcacgtagctactccagtatttgatggtgctaacgaaaatgacgtttgggac
actgttcgtcaagctggtattgataaagatggtaagactgttatttacgatggtcgtacc
ggtgaaccattccacaaccgtgtatctgtaggtgtcatgcactacttgaaacttactcac
atggttgatgacaagatccacgctcgttcaattgggccttactcattagttactcaacaa
cctttgggtggtaaagctcagttcggtggtcagcgtttcggtgaaatggaagtttgggcc
cttgaagcttacggtgcagcttacacattgcaagaaattttgacttacaagtcagatgat
gttgttggtcgtgtaaaggcatacgaagcaattgttaagggtgaaagaattcctaagcca
ggtgttccagaatcattccgtgttcttgttaaggaacttcaatcattaggtttggatatt
cgtgttcttgatatgaatcataatgaaattgaacttcgtgatatggatgaagattcaagt
gaacacttaaacattgattcattgtcacgtatggcagaagaacaagaaaagaagaagtta
gccgaagaaactggaaaatcagaagataagaaagaaaacaagaaagatgcagataagcca
gtagctcctgcagatgaatctgacgacaaagtttctaaatag
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