Lactobacillus helsingborgensis: DLD54_03100
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Entry
DLD54_03100 CDS
T06906
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lhs
Lactobacillus helsingborgensis
Pathway
lhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DLD54_03100 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhs03019
]
DLD54_03100 (rny)
Messenger RNA biogenesis [BR:
lhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DLD54_03100 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_2
ZapG-like
KH_NusA_2nd
V_ATPase_I
Motif
Other DBs
NCBI-ProteinID:
AWN33197
LinkDB
All DBs
Position
615173..616804
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AA seq
543 aa
AA seq
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MTSKFLIPVAIAIISIILGIVIGYVIRKSAWEKKARNAQNDADHILSEAKARVDAAKAEV
NAQKQAADAIKQSAQNTKKEKILEAQEQIQDYRQKVEDELNDKRDTIARDQNRLTQREDT
LDHKNSLLKEKEDDLAKKDEQLEKKQTELTTKLQKTDELVEQTTQKLYEVAHLDKEQAKK
LVLNQLADELVKERAEMISNSNEEVKAKADHYARKIIIDAIQSSSADTVAETTVSVVDLP
NEEMKGRIIGREGRNIRSFEALTGVDLIIDDTPKVVTLSGFDAIRREIAKRAMERLIKDG
RIHPARIEETVDKARKEVNDDIYEAGESALMELGIHKMNPELVKILGRLKYRTSYGQNVL
GHSIEVAKLAGTMAAELGLNEKLAVRAGLLHDIGKAVDHDIEGSHVEIGVELTRKYHEPD
VVVNAIAAHHGDVPKLSFIAELVVAADTISSARPGARSESLENYIRRLTDLEQIANRYDG
VKQAYAIQAGREVRVMVEPDKISDDRITVLARDIRNQIEKELDYPGNIKITVIREKRAVS
IAK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtaaatttttgattcccgtcgcgattgctattatttcaattatattaggcata
gttattggttatgttatccgtaaaagtgcttgggagaaaaaagcccggaacgcccaaaac
gatgccgatcatattttaagcgaagctaaagcacgagttgatgctgcaaaagctgaagtc
aatgcacagaagcaagcggctgatgctataaaacaaagtgcacaaaacacaaagaaagaa
aagattcttgaagctcaagagcaaattcaggattaccgacaaaaagttgaagatgaatta
aacgataagcgtgatacaattgcgcgtgatcaaaatcgtttaacacaaagagaggatact
ctcgatcataagaactctttgctaaaagaaaaagaggacgatttagctaaaaaagacgaa
cagctagaaaaaaagcaaactgaattaaccactaaattacaaaaaactgatgaattagtt
gaacagactacgcaaaagctttatgaagtagcccatttagacaaggaacaggctaaaaag
ctggttctaaatcaattagcagatgagctagtcaaagagcgggctgaaatgattagcaac
agcaatgaagaagtaaaagcgaaggctgatcattatgctcgtaaaataattattgatgct
attcaaagcagctcagctgatacagtggctgaaaccacagtatcagtggtagatttacct
aatgaagaaatgaagggtcgaattattggtcgtgaaggacgcaatattagatcatttgaa
gcactcacaggagtagatttaataattgatgatactcctaaagttgtaacactaagcggt
tttgatgcgattaggcgtgaaattgctaaaagggcaatggaacgcctgattaaagacgga
cgaattcatccggctagaattgaagagacagttgataaggctcgtaaagaagttaatgat
gacatttacgaagcgggcgaaagcgctctaatggagttagggattcataaaatgaatcct
gagttggttaaaatattgggtaggctcaaataccggacatcttatggtcaaaatgtattg
ggacactcaattgaagttgcaaagttagctggaacaatggctgcggagcttggattaaat
gaaaaattagcggttcgcgcgggattattacacgatattggaaaagcagtcgaccatgat
attgaaggttcacacgtagaaataggtgtggaattgacaagaaaatatcatgagccggat
gtggttgttaatgcaattgcggcgcatcacggggatgtgcctaaattatcatttattgct
gaattggtagtggcagcagatacgatttcttctgcaagacctggtgccagaagtgaaagt
ttggagaattacattagaagactgactgaccttgagcaaatagcaaataggtatgatgga
gttaaacaggcatacgctattcaagctgggcgagaagtacgggtgatggttgaacccgat
aagatttcagacgatcgcattacagttttagcacgtgatattcgtaatcagattgaaaaa
gaacttgattacccaggtaatattaaaataacagttattcgtgaaaaacgtgctgtatca
attgcaaaataa
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