Linepithema humile (Argentine ant): 105667492
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Entry
105667492 CDS
T04898
Symbol
Not1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105667492 (Not1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lhu03019
]
105667492 (Not1)
Messenger RNA biogenesis [BR:
lhu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105667492 (Not1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105667492 (Not1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
105667492
NCBI-ProteinID:
XP_012214734
LinkDB
All DBs
Position
1:complement(42228077..42240106)
Genome browser
AA seq
2404 aa
AA seq
DB search
MNLDSLSFTLSQISYLVANLSKRNFEVSCQEISHLVQLHGLEADRHLLRCLISYVDFSKG
EVSDSSAKDYFQTKLLKQECNSLLSKPSFISNLCFAVDKPLHHQKSLSPSPKFFTNLKKT
LDLTLVQEVAFAIALQHSENTEIRVLALEYTQKQLPELIKNYINSETNNKHHEGGLQDSL
PQVLQLILGQAFHTTNLYNLPTEAKEKFLKNLRRDFPRELVPVVLAPLLYPGDGEVLQFK
IELNMAVSQMDGNSLVELIMELGYSFTSSVEECRSAVAGLGAREISPTSTARLLAYMSRT
CSNLDDAGGLQSFWSNSAASQDSSKEKSTDNATPTTWNVEVFIQALKEIQSTLSWNEVIM
KLDHAEFVIKDRQGLNLLITGLKLGLQHQGYPLDVFPVELFYRHWDNVEGQFSLIQQILK
CPDIFCFADYPYHSVTVDVLKAAPEGDSKEGQTWRSLNMVELLLHMAERGLYSPVQEIFK
WPIQHCPDVLVLALLQINPPITILRQELLSTLMPIFLGNHPNSAVILHHAWHSNNVKIKT
IIMHSMAEWYVRGDHDQTRLSRILDVAQDLKALSALLNAQSFPFVIDLACLASRREYLKL
EKWLTDKIRDHGEVFVTASVKFLQRRCPQVMGPGIKEDPTIPKASQLPQETLTTILACLQ
VCTGNVSQELSDLIMTMVQNCSLMLSKTTINRPPPPGVLRHRALEPFNPTTLGSQLFSSK
QVDPLGNLSSSLASMGLGTALGPQSSSAFNLPGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGSTIGGLGRLGPPAGIEKARIPETSNLFPDMGQNVSKEVED
EANSYFQRIYNHPPHPTLSIDEVLDMLKKFQDSGIRREREVFNCMLRNLFEEYRFFPQYP
EKELQITAQLFGGIIEKGLVNSYVTLGLALRFVLDALKKPEGSKMYYFGITALDRFKSRL
KDYQTYCEHVRTIPHFNEFPQHLMEYIEYGLQGQEPPSRPQGPVLPKTLAAMLAPVTTPY
KTMTTTTVTTSTTQAKSSTTPTTSLSARPSMPSVANATNIDTLLVATDKEEKITTPPEAL
QDKTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDC
IKLPEVNKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILQIDI
DLKSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDL
KLNLKFEIEVLCKNLSIDVGELKPVIYLKDPEKLRNLEYQLSHLNKKAESTVNQQQSQGP
IEELVGPTTSTAMNPQSAPPVNTTPSLPTGPPEPRFNYMDISVTGIANISQHITINNQLA
LFQAHPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAA
RHMARNLTAGMAMITCRDQILASISTNLKQAFLTALLSTTSQQKEHVEQAANIVAADNME
LACAFVQKTAIEKAIPEMDKRLLNEIELRKLARQEGRRYCDPIAKYQAERMPEQIRLKIG
GVTSQQMAVYEEFARNIPGFLPLSERDTQALFMPKPISETPVTTFTPNSAVAVATVQQVA
YAAAVSNDEVGAVLEKLASEVEVLLNALGPAAPPPQHAALHSLLESIILTRRSRDAGAAM
GLLKKAVEGLLDGPIISNSVIESENLIQRYRDLHLRILKCLQDQRAYGMQWTNKHVTRCL
TECREEFRYNFEAVDYLIRSHLISLPQYDVALAQAMEAGNSMATAFAMQLVQLYLIDERQ
ATHVTETDLFHTIEILARMAHHRTPPDGISLFRLTNLVDSLRANHDSGVLVDRAPAGPTA
HIHSGILQVRARDFDDPPGLMEKTEYLLREWVSMHHSPQHARDPTKAFSIFVHQMNIHGI
LKTDDLITRFFKLSTQMCVDLCYRALSETTTAPSIMRAKCFHSLDAFVRLVALLVKHSGD
ATNTHTKINLLNKVLGIVAGVLLQDHEIRGTDFQQLPYHRIFIMLFLELCAPEPVLEAVN
FQVLTAFCHTLHILRPAKASGFCYAWLELVSHRVFIGRMLAITPQQKCWGMYAQLLIDLF
KYLAPYLRNAELAKPVTSLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLI
LSAFPRNMRLPDPFTPNLKVDMLQEIAHAPRVLTNFASTIQPLTFKKELDSYLKARAPVT
FLSELRSNLQVSQEAGVRYNIQLMNALVLYVGTQAITFIRSKGHAPNMSTIAHSAHMDIF
QNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPTYKFWSHEFVHCAPEIEKLFESVARSCMVQKQVPTTET
EIPE
NT seq
7215 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttgcgaatttg
agtaagagaaacttcgaggtcagctgtcaggaaatatcgcatttagtgcagttgcacggt
ctggaggcagaccgacatttgttgcgctgtctgatctcgtatgttgacttttctaagggt
gaagtatcagattcgagcgcaaaagattattttcaaacaaagttgctgaagcaggagtgc
aacagtttactaagcaaaccttcctttatatctaacttgtgctttgctgtggataagcct
ctacatcatcaaaagtcattgagtccctccccaaagttttttaccaacttgaaaaaaaca
cttgatttgactctagtgcaggaagttgcttttgcgatagcgttacagcactcggaaaac
acagagattcgtgtgttagccttggagtacacacagaagcagttgcctgagttaataaag
aattacataaattctgagacaaacaacaagcaccacgaaggtggtctgcaggattctttg
cctcaggttttgcaattgattcttggccaggcctttcacaccaccaatctttataattta
ccaaccgaggctaaagaaaaatttcttaaaaacttgcgacgcgactttccccgtgaactg
gtaccggtggtgttagcaccacttttgtacccaggtgacggggaagttctacagttcaaa
atcgagttaaacatggccgtcagtcaaatggatggcaactctttagtagagttaattatg
gaattaggatatagttttactagtagcgtagaagaatgtcgatcggcagtggctgggcta
ggtgcgagagaaatctcacccacgtccacagctcgcctattggcatatatgtcacgtact
tgtagtaatcttgacgatgctggaggtttacaatcattttggagcaactctgctgcttca
caggattctagtaaggaaaaatctacagacaatgctacccccacaacatggaatgtcgaa
gtgtttattcaagctttaaaagaaatccaatctacattatcttggaatgaagttatcatg
aagttggatcatgcagagttcgttatcaaggataggcaaggtttaaacttgctgatcaca
ggtcttaagttgggtctccaacatcaaggatatccactggacgtgttccctgtcgaactc
ttctaccgacactgggataatgtagagggtcaattttctctcattcagcaaattctgaag
tgtccggatattttttgctttgcggactatccgtaccattcagtaactgtcgatgtgtta
aaggcagcacccgaaggcgacagcaaggagggacaaacgtggcgatcgctgaatatggtc
gaactgctcttacacatggctgagaggggcctttacagtcctgtgcaagagatatttaag
tggccaattcagcattgccccgatgtactcgtgttggcgttattgcaaataaatccaccc
atcacaatcttgagacaagaactgctgagcacgctgatgcccatctttttggggaatcat
ccaaattctgctgtgatattgcatcatgcatggcattccaataatgtaaagataaaaaca
attataatgcactcaatggcagaatggtatgtacgtggcgatcacgatcaaacgaggttg
tcacgaattttggatgtcgctcaagatttaaaagctctatcagccctactcaatgcacaa
tcgtttccattcgtcatcgatcttgcttgtttagcatctcgacgagagtatttgaagtta
gaaaaatggctaacagacaaaattcgagatcatggagaagtttttgtcactgcatccgtc
aagttcttacaaagacgatgtcctcaagttatgggccctggaataaaggaagatcctaca
attccaaaagcgagtcaactaccacaggaaacgcttaccacaatactggcttgtttacaa
gtttgcactggaaatgtctcccaggaactttcggatttaatcatgacgatggtgcagaat
tgcagtctaatgttgagtaaaaccactataaacagaccaccgccaccgggagttctgaga
catcgagcattagaaccgttcaatccgacaactttaggaagtcagctattctcttccaag
caagtggatcctcttgggaatctcagttctagtcttgcttcgatgggccttggcacggct
cttggacctcaaagtagctccgctttcaatttgcctggtgcgttaggacctttggtttcg
gcacccggatcgccttcacgacttatgggaccttccccgagtccattccctatgttgccg
ctatcttcgcagttacattccggcccggtcggtactcaggggccatcggtgctaccgggt
agtacaataggtggattgggacgcctcggtccaccagctggcattgagaaagcgagaatt
ccggagacttccaatttattcccagatatgggacagaacgtatccaaagaggttgaagac
gaagccaatagttacttccaacgaatatataatcatccaccgcacccaaccttgtcgatc
gacgaggttcttgatatgctgaagaaatttcaggactccgggatcagaagagaaagagag
gtgtttaattgtatgctgcgaaatctattcgaggagtatcgattctttccgcagtatccg
gaaaaagaattgcagattacggctcagctgttcggcgggattatcgagaagggtctcgtc
aacagctacgtaacactcggattagcgctgagatttgtcctcgacgccctgaagaagccg
gagggcagcaaaatgtattatttcggcataacggcactcgatcgattcaaaagtcggctg
aaggattatcaaacgtattgcgagcacgtgaggactattccgcatttcaacgagtttccg
cagcacttgatggagtacatcgagtacggcttgcaaggacaggagccgccgtcgaggccg
cagggtccggttctcccgaaaactctggcggccatgttggcgccggtcacgaccccgtac
aagactatgaccacgactactgtcaccaccagcaccacgcaggcgaaatcgtctacgacc
ccgaccacatctctctcggctaggccttccatgccttcggtcgccaacgcgaccaatatc
gacacgctgctcgtggcgacggacaaagaggaaaagattacaacaccaccggaagctttg
caagacaaaacggcctttatcttcaacaatcttagccagttgaatctgcaacagaaatgc
gacgagattcgcgagatcgtcacggaggaatactggccgtggatggcgcaatatctagta
atgaaacgtgccagtatagaactgaactttcacgccttatattctaattttttggattgc
ataaaattacctgaagtcaataaaatggtcacgagagagacatttcgaaatattaaagtt
ctcttacgaagtgataaaggaatagctaatttctccgatcgatcgttattgaagaattta
ggacactggcttgggatgttgacgcttggcaggaataaacctattttacaaatagacata
gatctgaagagtttacttgtcgaagcgtatcacaaaggacaacaggaacttctttacgta
gtgccttttgtcgcaaaagtgcttgagagttgcgcgaaaagccgcgtttttcgtccacct
aatccttggaccatggcgattatgaatgtgctagccgaactacaccaggagcctgattta
aagttgaacttaaagttcgagatagaagtgttgtgcaaaaatctgagcatcgacgttgga
gaactgaagccggtgatttatctgaaagatcccgagaagctgcgcaatctggaataccag
ttgtcgcatctgaataaaaaagcggaaagcaccgtcaatcaacaacaatctcaggggcct
atagaggaattggtcggaccgacaacgagcaccgccatgaatcctcaatctgcgcctcct
gtgaatacaacgccttccttgcctaccggtccacctgaaccacgatttaattacatggac
atatcagtgacaggcatcgctaatatatctcagcacattaccatcaataatcagctagct
ctttttcaagcacatcctcacttgaagcaatttgttcggccagcggttgagagagcaatt
caggagtggattcatcccgtcgtggacagatctattaagattgctctcacaaccagcgaa
cagattgtgagaaaagatttcgctttggatccggaagaagtacggatgcgaacagcggcg
cgacacatggcgcgtaatctgaccgctggtatggcaatgatcacttgtcgcgatcagatt
ttagcgtcgatcagtacgaacttgaaacaagctttcctcacggcgttgttgagtacgact
tcacagcagaaggagcacgtcgagcaagcggcgaatatagtcgctgctgacaatatggaa
ctcgcatgtgcatttgtacagaagacagctattgaaaaagcgatacccgagatggacaaa
cgactgctgaacgagatagagttacgaaaactcgctcggcaagagggacgaagatattgt
gaccctatcgccaagtatcaagccgagaggatgccggagcaaattagattgaaaataggt
ggcgtgacatctcagcagatggctgtttacgaagaattcgctaggaatattcctggattc
ctgccactttccgaacgggacacacaagcgctctttatgccgaaacccatttctgagact
cctgttaccacatttacgcccaattcggccgtggcagtcgcgacggtacaacaagtagcc
tacgctgcggcagttagcaatgatgaagtgggcgccgtgcttgaaaaactggcgtcagaa
gtagaagttctattgaacgctctgggaccggcggcgccgccgccgcagcacgctgccctt
cacagccttttggaatcgatcattcttaccagaagatcgagagacgctggcgccgctatg
ggattactgaagaaagccgttgaaggtttactggacgggcctattatttctaatagcgtc
atcgagtcggagaatctcatacaacgctacagggacttgcacttgcgtatcttgaaatgt
cttcaagatcaacgcgcatacggtatgcagtggaccaacaaacacgtaactcgttgccta
accgaatgcagagaggaattccgatataatttcgaggccgtcgattatctcataagatct
catttgattagtcttccgcaatacgatgtagctctggcccaagctatggaggcaggaaat
tctatggcaactgcatttgctatgcaattggttcaactctatttgattgacgagaggcag
gcgactcacgttaccgaaaccgacttgttccacacgattgaaatattggctcgaatggca
catcataggacaccaccggatgggatctcactcttcagattaacaaatctagtagattcg
ttgcgtgccaatcatgattctggcgtattggtagacagagctccggcaggaccgacggca
catattcattctggaatcctgcaggtgagagctcgcgatttcgacgatccacccggactg
atggaaaagacggagtatctgctgcgcgagtgggtctcaatgcaccacagcccgcagcac
gcgcgcgatcctacgaaagcattcagcatatttgtacatcaaatgaacatccacgggatc
ctcaagactgacgatctcatcacacgattcttcaagctcagcacgcagatgtgcgtcgat
ctctgttaccgtgctctctcggaaactacgacggcgccctcgattatgcgcgcaaagtgc
ttccactcgttggacgcgtttgtgcgtcttgtagccctgctggtgaagcattcgggcgac
gccaccaacactcacacgaagatcaatcttttgaataaagtgcttggtatcgtagctggt
gtgcttctgcaggatcacgaaatacgcggcaccgacttccaacagctaccgtatcacagg
atcttcattatgctcttcttggagttgtgcgcgcccgagccagtgctggaagccgtcaac
ttccaggtcctgacggccttttgtcatactctgcacatactgcggccggcgaaagcgtcg
ggcttctgttacgcctggctggaactggtctcgcatcgcgtcttcatcggacgcatgctc
gccatcacgccgcagcaaaagtgctgggggatgtacgcgcaacttctcatcgatctcttc
aagtacctcgcgccgtatttgcgtaatgcggagctcgcgaaacccgtgacgagcctctac
aaaggaacgctacgggtgttgctggtgctgctgcacgattttcccgagttcttatgcgat
tatcattacggattctgtgatgtaataccgccgaactgtatacaaatgagaaatctgatt
ttgagcgcgttcccgcgaaatatgcgcctgcccgatccgttcacgccgaatctgaaagtc
gacatgctgcaggagatagcgcacgccccgcgcgtgctcaccaatttcgcgtctacgata
cagccgttgactttcaagaaggagctcgattcttatctgaaggcacgcgctccggtcacc
tttctgtctgaacttcgcagcaatctgcaagtgtcgcaagaggccggtgtgcgctacaac
atacagctgatgaacgctctggtgctctacgtgggcacgcaggccataacgtttattcgc
agcaagggccacgcgcccaacatgtccacgatcgcgcattccgcgcacatggacatcttc
cagaatctcgctgtcgatctcgacaccgagggtcgttacctgttcctgaacgccattgcg
aatcaattgcggtatcccaacagtcatacgcattacttcagttgtacgcttctttaccta
ttcgccgaggcgaacacggaagcgatacaggagcagatcaccagggtcctcctcgaaaga
ctgatagttaacagaccgcacccgtggggtctgctcatcacattcatcgagctcatcaaa
aatccaacgtataaattctggtcgcacgagtttgtacactgtgcgccagaaattgagaaa
ttgttcgagtctgtagctcgatcttgtatggtgcagaaacaggttcccacgacggagaca
gagattccggagtga
DBGET
integrated database retrieval system
