Linepithema humile (Argentine ant): 105670002
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Entry
105670002 CDS
T04898
Name
(RefSeq) collagen alpha-3(IX) chain-like isoform X1
KO
K08131
collagen type IX alpha
Organism
lhu
Linepithema humile (Argentine ant)
Pathway
lhu04512
ECM-receptor interaction
lhu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lhu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105670002
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105670002
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lhu00535
]
105670002
Proteoglycans [BR:
lhu00535
]
Extracellular matrix (ECM) proteoglycans
Others
105670002
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
105670002
NCBI-ProteinID:
XP_067215428
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Position
7:17101383..17118623
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AA seq
954 aa
AA seq
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MYMQTWLFMIVYLSYAQYVMGEDTIKRGLCNGYKSGEDDQQTFDFISKLKFDLLEARYSG
MMKVRGSNRMQTAYRLERDTDVILPTKNITANGFPEEFTLVYTLRARKSPRNPWHVIKIV
DAKGDAQFLITMNPRRQTLDLSLIDYEGKLQTLSFMNDRLFDKSWHKVNFGVYKDKLVLN
VDCIHIGTKALKPRRSIKGDGDISIAKMNNSEVTVPIDMQWMVLNCDPTRAERETCEEIP
QNLVAPLSQIKPACEICPQGPRGFNGTNGSPGPPGLTGAPGLTGSPGLPGFPGQRGLPGE
QGRSGATGNIGARGFPGLPGPIGSTGPVGSPGLPGQKGDRGERGDMGFPGLKGDQGPRGF
PGPPGNVSNFDGNLSHLTGPSGPPGYTGEKGAKGDYGIQGKPGEKGERGERGYPGLDGHN
GAPGPPGLPGFPGPPGPTRNPTYADIPRIPGPPGPRGITGPPGLPGPPGLPGEMGPKGDA
GDRGRDGISGLTDNSVIPGPPGPEGLVGPPGDDGLPGEKGENGPIGPPGLPGTLGKDGLP
GLPGPQGLLGSRGEPGSPGPRGLDGFMGKPGLDGKPGQKGNKGQSGEQGPVGPRGLPGSS
GPAGSPGTPGVPGLEGRPGPFGPPGPSGPPGPPGPPGPSSLSSTDSSFVNIGNPGLEGPR
GPPGPQGIVSIVFKIKINLAKFNELKTNLKLKKKKKKKKKQPGERGAPGERGSEGQLGPP
GIPGRDGTPGLQGSPGNRGQTGLPGLEGPPGRSISEVEIRDICASVLRERITEITTLMQG
PPGPPGRGRPGRSGSPGPQGRPERLKELTEGLRGLPGLPGPARHGRPGRVGAQGIPGDQG
PPGFPGERGFVGLPGPQGPSGPQGSPGERGEKGDRGLEGVGIEGPTGPPGLPGPPGNDGI
GLPGTQGDRGEPGRPGIPGIRGVAGPQGPPGFCEFCNYPSSNYLQYNRGNTKGP
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtatatgcaaacatggctattcatgatagtgtatttgtcatatgcccaatatgttatg
ggagaagatactatcaaacgtgggctgtgcaatggctacaaatccggcgaagacgatcaa
cagaccttcgatttcatcagcaagttaaaattcgatctgttggaggcccgctatagtggc
atgatgaaagtgcgaggcagcaaccgcatgcagacggcatatcggctggagagagacact
gatgtcatcctaccgacaaaaaatattacagctaatggatttccagaagaattcacgtta
gtgtacacattgagagctagaaaatcgcctaggaacccttggcatgtcattaagatcgtg
gatgcgaaaggtgacgctcaatttctcattacgatgaatcccaggagacaaacgctggac
ctttcattgattgattacgagggaaaattgcagacgctttctttcatgaacgatcgctta
ttcgacaagagttggcacaaagtaaattttggagtgtacaaggataagctagtacttaac
gttgattgtatacacattggcacgaaagcgctaaaaccgcgcagatcgattaaaggtgat
ggagacatatcaatagctaaaatgaacaacagtgaagtcactgtaccgatcgatatgcaa
tggatggtcctaaactgcgatcctacgagagcggagagggaaacgtgcgaggaaataccg
caaaacctagtcgctccgttgtcgcaaataaaacccgcctgcgaaatctgtccgcaggga
ccacgtggatttaatggcacaaacggatcacccggtccgcctggactaactggagcgccg
ggattgactggatcaccaggtttacctggatttcccggacaacgtggattacctggggaa
caaggaagatcaggggcaacaggtaacatcggcgccagaggttttccaggattaccgggt
cccataggatcaactggacccgtaggatcaccgggattaccgggacaaaagggcgatcgc
ggtgaaagaggtgatatgggatttcccggtctgaaaggagatcaaggtcctcgtggattt
ccgggtccgccggggaacgtaagcaattttgatggtaatttatcgcacttaacgggccct
tctggaccgcctggatataccggcgaaaaaggggcgaaaggagattacggtattcaaggc
aagccgggtgaaaaaggtgaacggggagaaagaggatatccgggattggatggtcataac
ggcgcaccaggacctcctggtcttccaggatttcccggtccgcctggacccacaaggaac
cctacatatgcggatatccctcgcattcctggaccaccaggtcctcgtggcataacaggt
cctccaggattgccaggacctccgggtttgccaggtgaaatgggaccgaagggtgatgcc
ggagaccgaggtcgagatggtatatcgggactaacagataatagtgtaataccaggacca
ccgggtcctgaaggacttgttggtccccctggcgatgatggtcttccaggcgagaaagga
gaaaatggaccaataggtcctccaggactacctggaactctaggaaaagatggacttcca
ggattaccgggaccacagggacttctagggtcacgtggagaaccaggttctccaggacct
cgaggtttagatggatttatgggaaaaccggggctcgatggaaaaccgggccagaaggga
aataaaggccagagcggcgaacaaggtcctgtcggacctcgcgggctaccgggaagttcg
ggaccagcaggctcgccaggtacgccaggcgtaccaggattggaaggaagaccaggtcca
ttcggacctccaggaccgtcgggtccgccaggacctccgggtcctcccggtccttccagt
ctttcatccaccgatagtagttttgttaatatcggcaatcctggtctcgaagggcccaga
ggtccaccgggtcctcaaggaatagtaagcatcgtatttaaaattaaaataaatctagcc
aaattcaatgaattaaagacaaaccttaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaa
cagccgggtgagagaggagctcctggagaacgaggatcggaaggtcaattaggaccgcct
ggtattcctggtagagatggaacacctggattacaaggatcgcctggaaatagaggtcag
accggattaccgggactcgaagggccgccgggtcgcagtattagcgaggtggagattcgt
gatatttgcgccagtgtactgagagaacggataaccgaaatcacaacattgatgcaaggc
ccacccggtccaccaggccgaggccgtccaggtcgttctggatcacccggccctcagggt
cgtccagagaggctgaaagaactaacagagggtctacgagggctacccggattgccagga
ccggctcgacacggccgtcccggtcgagtcggagcgcagggcattccaggcgatcaagga
ccaccgggatttccaggagaacgtggattcgtcggtttaccgggtccgcaaggtccttct
ggaccgcaaggatcacctggcgaacgtggagaaaaaggagacaggggtctcgaaggcgtc
ggtatagaaggtccgactggcccaccaggtttaccaggacctcctggtaatgatggtatt
ggtctacctggaacacagggagacaggggagagccaggcagaccaggaattcctggtata
agaggagtggcaggaccgcagggaccacctggattttgtgaattctgcaattatcctagc
agcaattacttgcagtataatcgtggtaacaccaaaggaccctga
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