Limnohabitans sp. 103DPR2: L103DPR2_00592
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Entry
L103DPR2_00592 CDS
T04120
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
lim
Limnohabitans sp. 103DPR2
Pathway
lim02020
Two-component system
lim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lim00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
L103DPR2_00592 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L103DPR2_00592 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lim03021
]
L103DPR2_00592 (rpoN)
Transcription machinery [BR:
lim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L103DPR2_00592 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ALK90999
UniProt:
A0A0P0MD98
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All DBs
Position
complement(616301..617845)
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AA seq
514 aa
AA seq
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MSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERSTDEAPQEDFGLPEADARV
SLGDRVSEAASDAGADSRDAASESTASVSNDEAVTDVADSWDGDGSVEIAPDDSEWGTDA
GARKNNTNNDSDGADAIELARGLGSLTEYLHRQALSMRLSEIDRAALRFLIESLNDDGYL
EDSLESLAQGLAGTDDIEQLEELVHRFTVALSLLQSLEPVGIGARDLGECLRIQLKAILK
DEPDHEVAAVGLKICVLPLELLAKRDFKRLAVQCGEDEGIVKQALAFITRLEPKPGRPFA
NAEQHVIVPDVLVIGTRKGGEPHFRVQLNPDVMPKLRVHDIYANALRGGKGEAHLGLQQR
LQEARWFIKNIQQRFDTILRVSTAIVERQRNFFIHGELAMRPLVLREIADELGLHESTIS
RVTTAKYMTTPMGTFELKYFFGSGLGTDSGSAASSTAVRALIKQLVAAENPNKPLSDNQL
SEMLKEQGIDCARRTVAKYREALKIAPANLRKTL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagcacttggcgctgacgccacagttgcaacaatccattcggctgcttcaactc
tcgaccttagagctcagccaagaagtcgagcaaatgctcgacgaaaaccccttcctcgag
cgcagcaccgacgaagcaccgcaagaagattttggcttgccagaagccgatgcgcgcgtc
agcttgggcgaccgtgtgtcagaagccgccagcgatgccggcgctgattcacgcgatgct
gccagcgaatccacagcgtccgtttccaatgatgaagccgtgaccgatgtagccgacagc
tgggatggcgacggcagcgtcgagattgctcccgacgacagcgaatggggcaccgacgcc
ggcgcgcgcaagaacaacaccaacaacgattcggatggcgcagacgccattgagttggca
cgcggtctgggctcactcaccgagtatttgcaccgacaggctttgtcgatgcgcttgtcc
gaaattgaccgcgcagccttgcgcttcctcatcgagtctttgaacgacgacggttatctg
gaagacagcctcgagtctttggcgcaaggcctggccggcaccgacgacattgagcaattg
gaagagttggtgcaccgcttcacggtggctttgagcttgctgcaatcactcgaaccggtg
ggcattggcgcacgtgatttgggcgagtgcttgcgcattcaactcaaagccatcttgaaa
gatgagcccgaccacgaagtggctgccgtaggcctcaaaatttgcgtgctgcctttggag
ctgctggccaaacgcgatttcaaacgcttggcggttcagtgcggtgaagacgaaggcatt
gtcaaacaagcgctggcattcatcacgcgcttagaacccaaacccggtcgtccttttgcc
aatgccgagcagcatgtcatcgtgcccgatgtgttggtcattggtacgcgcaaagggggc
gagccgcacttcagagttcagctcaaccccgatgtgatgcccaaactgcgggtgcacgac
atttacgccaacgccttgcgcggcggcaaaggcgaagcccatttgggtttgcaacaacgc
ctgcaagaagcgcgctggttcatcaaaaacattcaacagcgctttgacaccattttgcgt
gtgtcgacggctattgtggagcgtcagcgcaatttcttcatccatggtgaattggccatg
cgccccttggtgctgcgagaaattgccgatgaactgggcttgcacgagtccaccatcagc
cgcgtcaccacggccaagtacatgaccacgcccatgggcaccttcgagttgaagtatttc
ttcggctcgggcctaggcaccgacagtggcagcgcggcttccagtacagccgtgcgtgcg
ctcatcaaacaattggtggcagccgaaaatcccaacaagccgctctcagacaaccaactg
tctgaaatgctcaaagaacaaggcatcgattgcgcacgtcgcaccgttgccaaataccgc
gaggcgctcaaaattgcgcccgccaacttgcgtaaaactctgtga
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