Limnobacter sp. SAORIC-580: HKT17_01765
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Entry
HKT17_01765 CDS
T06583
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
limn
Limnobacter sp. SAORIC-580
Pathway
limn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
limn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HKT17_01765 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
limn03021
]
HKT17_01765 (rpoB)
03400 DNA repair and recombination proteins [BR:
limn03400
]
HKT17_01765 (rpoB)
Enzymes [BR:
limn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HKT17_01765 (rpoB)
Transcription machinery [BR:
limn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HKT17_01765 (rpoB)
DNA repair and recombination proteins [BR:
limn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HKT17_01765 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QJR28524
LinkDB
All DBs
Position
383385..387494
Genome browser
AA seq
1369 aa
AA seq
DB search
MSYSATEKKRIRKSFAKRPPVLDVPYLLTTQLDSYTDFLQLGLPVEKRAEQGLQAAFQSV
FPIVSHNGYARLEFVQYALGEPAFDVKECQQRGLTFCSPLRARVRLVLLDREASKPTVKE
VKEQEVYMGELPLMTQNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGMNNEQILSTFFEFDQFEIKSEG
ASMDLVTSRLKGEVAKFDIVDKAGKVLVQKDKRINAKHIRDIEAAGLKKISVPEDFLIGR
TLAKNIVDGSTGEVVASANDEITEEIMGKIRDAGVKVVETIFTNELDHGAYISQTLRTDE
TADQTAARVAIYRMMRPGEPPTEEAVEMLFNRLFYSEDSYDLSRVGRMKFNRRVGRPEVE
GAMVLQDDDILAVIKILVDLRNGNGEIDDIDHLGNRRVRCVGELAENQFRAGLVRVERAV
KERLGQAEAENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSMAMFARLNEYGFLETPYRKVE
GGVVSDEIVYLSAIEEGRFVIAQANAEIDEKKRLVGDLVSCRVAGEFELMDPSGVELMDV
APGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPFAGTGIERTVAVDSGTV
IVADHGGVVDYVDANRIVIRVNDNEVESGSVGVDIYNLTKYTRSNQNTNINQRPIVNKGD
IIAKGDVIADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISERVVAEDRYTSIHIEE
LSVVARDTKLGSEEITRDISNLSEAQLSRLDESGIVYIGAEVQAGDVMVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELKR
YRLDLNDQMRIVEADAFSRIERFLIGKVANGGPAKLAKGSKITAEYLKEVDHHHWFDIRL
AEEEAAGQLETLKKSIEDKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQP
GDKMAGRHGNKGVVSKIVPVEDLPHMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAK
GIGDRINEMLREQNAVARLREYLHKVYNGTGTTVDLDSLTDQEIINMGKNLTKGMPFATP
VFDGANEEDILEMLRLAYPDEDPRMQALGFNDSKTQVTLYDGRTGDAFDRKVTVGYKHVL
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV
KSDDVNGRTKVYENLVKGDHTIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgtcttactctgccaccgagaaaaaacgcatacgcaaaagctttgcgaaacggcctcca
gttttggatgtaccgtaccttctcaccactcaacttgactcttacactgactttcttcaa
ttgggtctcccggttgaaaaacgtgcagaacaagggttacaggcagcatttcagtctgta
tttccaattgtttcgcacaacggctatgcacgcttggaatttgtgcagtacgcactgggc
gaacccgcttttgacgtcaaagaatgtcaacagcgtggtctgaccttctgctcgcccttg
cgggcgcgcgtgcgcttggtgcttctggatcgtgaggccagcaagcccaccgtgaaagaa
gtcaaggagcaggaagtgtatatgggtgaattgccactcatgacacagaatggttccttt
gtgatcaatggcaccgaacgcgttatcgtgtcacagttgcaccgttcgcctggtgtgttt
ttcgaacacgaccgtggtaaaacccacagctcaggcaagttgctgttctcggcccgtatc
attccttatcgtggctcttggctcgatttcgaatttgatcccaaagacatcctgtatttc
cgtgtagaccgtcgtcgcaagatgccagtcacgattttgctcaaagccatcggcatgaac
aacgagcaaatcctgtccaccttctttgaattcgaccagttcgaaatcaaatccgaaggc
gcatccatggatctggtcacttcgcgtttgaaaggcgaagtcgcaaagtttgacatcgtc
gacaaagcgggcaaggttctggttcagaaagacaagcgtatcaatgccaagcacattcgt
gatattgaagcggctggcttgaagaaaatttccgtgcctgaagatttcctgattggccgc
accttggccaagaacattgttgatggcagcactggcgaagttgtggcctctgccaacgac
gaaatcaccgaagaaatcatgggcaaaatccgtgacgcaggcgtgaaagtggttgaaacc
atcttcaccaacgaactggatcacggcgcttacatttctcaaacgctgcgcactgacgaa
acagcagaccagaccgcggcacgcgttgccatctaccgcatgatgcgtccaggcgagccg
cccacggaagaagcagttgaaatgctgttcaaccgactgttctacagcgaagactcctac
gatttgtctcgtgtgggtcgcatgaaattcaaccgccgtgttggccgtcccgaagtggaa
ggcgccatggtgcttcaagacgacgacatcttggccgtaatcaagattctcgttgacttg
cgcaacggcaacggcgaaatcgatgacatcgatcacttgggtaaccgtcgagttcgttgt
gtcggcgaattggctgaaaaccagttccgcgcaggtttggtgcgtgttgagcgtgccgtg
aaagagcgtctggggcaggctgaagccgagaacctgatgccgcacgatctgatcaactcc
aagccaatttctgcagcaatcaaggagttctttggttcttcccaattgtcgcagttcatg
gaccaaaccaaccccttgtcagaaatcacgcacaagcgtcgtgtttctgctttgggccca
ggcggtttgacccgtgagcgtgccggctttgaggttcgtgacgtacacaccacccattat
ggtcgtgtgtgcccaatcgaaacaccggaaggcccaaacattggtttgatcaactccatg
gcgatgttcgctcgtttgaacgagtacgggttccttgaaacgccttatcgcaaagtggaa
ggcggtgtggtgtccgatgaaatcgtttacctgtcagcgattgaagaaggccgtttcgtg
atcgcccaggcgaacgcggagatcgacgagaagaagcgcttggtcggtgacttggtttcc
tgtcgtgtggccggtgaattcgaattgatggatccgtccggcgttgagctgatggacgtt
gcaccaggtcaaatcgtgtctgttgccgcatcgctcattccattcctggaacacgacgat
gcgaaccgtgccttgatgggtgccaacatgcaacgtcaggctgtgccatgtttgcgtcct
gaaaagccgtttgccggtactggcattgagcgtaccgtggctgtcgactcgggcacagtc
atcgtggctgatcatggtggcgtggttgattacgtggacgccaaccgaattgttattcgt
gtgaatgacaatgaagtggaatcgggttcagtcggtgttgatatctacaacctgaccaag
tacacacgttcaaaccagaacaccaacatcaaccaacgtccgatcgtgaataagggcgac
atcattgccaaaggcgatgtaatcgccgatggcgcgtcgactgacctgggcgaattggcc
ttgggtcagaacatgctggtcgctttcatgccctggaacggttacaacttcgaagattca
atcttgatctccgagcgtgttgtggcagaagaccgctacacctcgattcacatcgaagag
ctgtcggttgttgcgcgtgatactaagctgggttccgaagaaattacacgcgacatttcc
aatttgtccgaagctcagttgtcacgtctggatgagtccggcatcgtgtacatcggtgcg
gaagtacaagctggtgacgtcatggtgggtaaggtcacgccgaaaggcgaaacccagctt
acgccggaagaaaaactgctgcgcgccattttcggtgaaaaagcatccgacgtgaaagac
acctccctgcgcgtgccttccggtatgacaggtacggtgatcgacgttcaggtattcacc
cgtgaaggcatcgttcgcgacaagagggcacagtccatcattgatgacgagctgaagcgt
tatcgcctcgacctgaacgaccagatgcgtattgttgaggccgatgctttcagccgtatc
gagcgtttcctgatcggtaaggtcgccaacggcggtcctgccaagttggccaaaggcagc
aagatcactgctgaatacttaaaggaagtggatcaccatcactggttcgacattcgcttg
gcagaagaagaagccgcgggtcaactcgaaacattgaagaagtccattgaagacaagcgt
catcagttcgatttggcctttgaagaaaagcgcaagaaattgacgcaaggtgatgaactg
ccaccaggtgttttgaaaatggtcaaggtgtacctggccgtcaagcgccgcttgcagcct
ggtgacaaaatggctggccgtcacggtaacaagggtgtggtttccaagatcgttcctgtg
gaagacctgccgcacatggctgatggtcgtcccgtcgacatcgtattgaaccccttgggt
gttccttcacgtatgaacgtgggtcaaattctggaaacccacctgggttgggctgccaag
ggcattggcgatcgcatcaatgaaatgttgcgtgaacaaaatgcagtggcgcgtctgcgt
gaatacctgcataaggtgtacaacggcacaggcacaacagttgatctcgattccctgact
gatcaggaaataatcaacatgggcaagaacctgaccaagggcatgcctttcgccacgccc
gtattcgatggcgcgaacgaagaagacattctggaaatgcttcgcttggcttaccccgac
gaagatccgcgtatgcaagccttgggctttaacgattcaaaaacccaggtgaccctctat
gacggtcgcacaggcgacgcatttgaccgcaaggttaccgttggctacaagcatgtgctg
aaactgcaccacttggtcgacgacaagatgcatgcccggtcaacaggaccatactctttg
gtcacgcagcaaccactgggcggtaaagcccagtttggtggtcagcgtttcggtgagatg
gaagtgtgggctttggaagcttatggcgcgtcgtacgtacttcaggaaatgttgactgtg
aagtcagacgacgtgaatggtcgtacgaaggtgtatgagaatttggtcaaaggtgatcac
acgattgatgccggtatgccggaatctttcaacgtactcgtgaaagaaatccgctcactc
ggtattgatattgatctggaccgtaattga
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