Listeria innocua (serotype 6a): rpoB Help Entry rpoB              CDS       T00067                                  Name (GenBank) RNA polymerase (beta subunit)   KO K03043   DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Organism lin  Listeria innocua (serotype 6a) Pathway lin03020   RNA polymerase Brite KEGG Orthology (KO) [BR:lin00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     rpoB  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:lin03021]     rpoB    03400 DNA repair and recombination proteins [BR:lin03400]     rpoB Enzymes [BR:lin01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      rpoB Transcription machinery [BR:lin03021]  Prokaryotic type   Bacterial type    RNA polymerase     Core subunits      rpoB DNA repair and recombination proteins [BR:lin03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase complex (RNAP)       rpoB BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Motif Other DBs NCBI-ProteinID:  CAC95518 Pasteur:  LIN00285 UniProt:  Q92F22 LinkDB All DBs Position 291763..295317 Genome browser AA seq 1184 aa AA seqDB search MSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFLDEGLREMFRDISPIED FAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLINKETGEVKDQEVFMGDFP LMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKGFGSTVIPNRGAWLEYETDAK DVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRNTLEKDNTDNAEKALLEIY ERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRYKINKKLHLKNRLFNQTLAETLVDP ETGEIIASKGDILDRRNLDQIIPNLENGVGFRTLRPTDGVMEDSVLVQSIKIYAPNDDEK EINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQ FRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGE LTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNK FGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSE NLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVG TGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSN QGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSE RLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDN DLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGD ELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNP LGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTVLYD GRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME VWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLG MDVKMLSADEEEIEMRDMDDDDFTNQNDAFNIVQPENAATEKTE NT seq 3555 nt NT seq  +upstreamnt  +downstreamnt ttgtcaggacattcaggacatgatgtaaaatatggacggcatcgtacgcgtagaagtttt gcgcgaatcagtgaagtacttgaattaccaaacttaattgagattcaaacagcttcttac caatggttcttagatgaagggctacgtgagatgttccgcgatatttcgccaattgaggat tttgcgggtaatttatctttagaattcattgattacgatcttggagaaccgaaatactcg gtagaagaatctaagaaccgtgatgcaaactatgcggctccactacgcgtgaagttgcgc ctaatcaacaaagaaaccggcgaagtaaaagaccaagaagtatttatgggtgatttccca ctaatgactgaaatgggtacgttcattattaatggggcagaacgtgttatcgtttcccaa ttagttcgttctccaggtgtttacttcaatggaaaactagacaaaaatggtaaaaaaggc tttggttctactgtcatccctaaccgtggggcttggcttgagtatgaaacagatgctaaa gacgttgtacacgttcgtattgaccgtacacgtaaattaccagtaactgttttacttcgt gcactaggctttggttccgatcaagaaattattgatttaatcggggacaatgactacttg cgcaacacgcttgaaaaagacaacactgacaatgctgaaaaagcacttctagaaatttac gaaagattacgtccgggtgaacccccaacagttgataacgctagaagcttactagtttct cgtttctttgatccaaaacgctacgatcttgcaagcgttggacgttataaaatcaacaaa aaattacatctgaaaaaccgtctattcaaccaaacattagcagaaactttagtggatcca gaaactggtgaaattatcgcttctaaaggtgacattttggatcgtcgtaatttagatcaa attattcctaatttagaaaacggtgtaggtttccgcacacttcgtccaactgatggagtt atggaagatagcgtactcgttcaatctattaaaatctatgcaccaaatgatgacgaaaaa gaaatcaacatcattggtaacgcgtatattgaagaaaatgtaaaacacatcacgccttct gatattatttcatccattagctacttctttaacttgctacatggtgttggcgatacagat gacatcgatcacctaggtaatcgtcgtcttcgttctgttggtgaacttttacaaaaccaa ttccgtatcggtttatcccgtatggaacgtgtagttcgtgagcgtatgtctattcaagat atgactacaattacaccacaacaattgattaatattcgcccagtagttgcttctattaaa gaattctttggtagctcgcagttatcccagttcatggatcaaacaaatccacttggcgaa cttacgcataaacgtcgtctttcagcgcttggacctggtggtttgacgcgtgaacgtgct ggttatgaagtacgtgacgtgcattactctcactatggccgtatgtgtccgattgaaacg ccagagggaccgaacattggtttgatcaactccctttcttcctttgcgaaggtaaataaa ttcggctttatcgaaacgccttaccgccgcgtagatcctgaaacaaaccgtgttactgat aagattgattatctaactgcggatgaagaggataattacgttgtagcgcaagcgaactcg aaattagacgaacaaggtactttcacagaagaagaagttatggctcgtttccgttcagaa aacttagcggtagaaaaagaacgtattgactacatggacgtatcgcctaaacaggttgta tctgttgcgactgcatgtattccgttccttgaaaacgatgatagtaaccgtgcgctaatg ggagcgaacatgcaacgtcaagcggttcctcttatgcaccctgaagctccatttgttgga acaggtatggaacacgtatctgcaaaagactctggtgcagctgtaactgccaaacatgac ggtattgtagaacacgttgaagctcgcgaaatctgggttcgtcgtgtatctctagtggat ggcaaagaagtaactggcggaattgataaatatacattacgtaaatttgttcgttctaac caaggtacttgttataaccaacgtccaaacgtagcagaaggtgaccgcgttgttaaagga gaaatccttggtaacggtccatcaatggattccggtgaacttgctcttggtcgtaacgta ctagttgcgttcatgacttgggatggttataactacgaggatgcgatcatcatgagtgaa cgtcttgtaaaagatgacgtttatacttcgattcatattgaagaatttgaatcagaagct cgtgatacaaaactcggacctgaagaaatgactcgtgatattccaaatgttggggaagac gctttacgcgaccttgacgaacgtggaattatccgtgtcggtgctgaagtaaaagacaac gaccttctagttggtaaagtaacaccaaaaggagttactgaattaactgcagaagaacgt ttattacacgctatctttggtgaaaaagcacgtgaagttcgtgatacttcattacgtgta cctcatggcggcggtggaatcgtgcttgacgtgaagatctttacacgtgaagctggcgac gaactaccacctggtgtaaaccaattagtacgtgtttatattgtacaaaaacgtaaaatc cacgaaggcgataaaatggccggacgtcacggtaacaaaggggttatctcccgtatttta cctgaagaagatatgccatttatgccagacggaacacctgttgacatcatgcttaaccca cttggggtaccatctcgtatgaatatcggacaagtacttgagctacacttaggtatggct gctcgtgctttaggaattcacgttgcaactccagtatttgatggagcgaatgaagaagat gtatggagcactgtggaagaagccggtatggcccgcgatgcgaaaacagttctttacgac ggacgttctggtgaagcatttgataaccgtatctctgtaggtgtaatgtacatgatcaaa cttgcccacatggttgatgataaacttcatgcgcgttcaactggaccttactctctagta acgcaacaaccgcttggtggtaaagcacaatttggtggacaacgttttggggaaatggaa gtatgggcacttgaagcatatggtgccgcttatacacttcaagaaatcctaacgattaaa tccgatgacgtggttggtcgtgtgaaaacttacgaagcgattgttaaaggcgaaagcgtt ccagaacctggtgtgccagaatccttcaaagtactcatcaaagagcttcaaagtcttgga atggacgttaaaatgctttccgcagacgaagaagaaatcgagatgcgtgacatggatgat gacgactttactaatcaaaatgatgccttcaatatcgtacaaccggaaaatgcagccact gaaaagactgagtaa

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