KEGG   Lotus japonicus: 130721447
Entry
130721447         CDS       T04348                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
lja  Lotus japonicus
Pathway
lja03018  RNA degradation
lja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130721447
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130721447
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lja03019]
    130721447
   03041 Spliceosome [BR:lja03041]
    130721447
Messenger RNA biogenesis [BR:lja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     130721447
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     130721447
Spliceosome [BR:lja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    130721447
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 130721447
NCBI-ProteinID: XP_057428226
LinkDB
Position
5:complement(55983223..55985890)
AA seq 139 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPPGVGRGRGRGREDGPGGRGRGFDEGGARG
RGRAGPGGRSGGNRGRGRG
NT seq 420 nt   +upstreamnt  +downstreamnt
atgttgcccctttcccttctcaaaactgcccaagggcacccaatgttggtggagctgaaa
aatggggagacttataatgggcatttggttaactgtgatacatggatgaacatccatctc
cgggaagtcatctgtacctctaaagaaggaactgaattttggcgtatgcctgaatgctac
attcgcggaaataccattaagtaccttcgggttcctgatgaggttattgacaaagtccag
gaagaaaccaaaacccgcaccgatcgcaaaccacctggtgtgggacgcggaagaggaaga
ggtagggaggatggtcctggtggccgtgggcgtggctttgatgaaggtggggcgagaggg
cgaggcagggccggtccaggtggaaggtctggtggaaacagagggcgaggtagaggttga

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