Lotus japonicus: 130721447
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Entry
130721447 CDS
T04348
Name
(RefSeq) sm-like protein LSM4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
lja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130721447
09123 Folding, sorting and degradation
03018 RNA degradation
130721447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130721447
03041 Spliceosome [BR:
lja03041
]
130721447
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130721447
mRNA degradation factors
5'-3' decay
Lsm complex
130721447
Spliceosome [BR:
lja03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130721447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
130721447
NCBI-ProteinID:
XP_057428226
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Position
5:complement(55983223..55985890)
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AA seq
139 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPPGVGRGRGRGREDGPGGRGRGFDEGGARG
RGRAGPGGRSGGNRGRGRG
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgttgcccctttcccttctcaaaactgcccaagggcacccaatgttggtggagctgaaa
aatggggagacttataatgggcatttggttaactgtgatacatggatgaacatccatctc
cgggaagtcatctgtacctctaaagaaggaactgaattttggcgtatgcctgaatgctac
attcgcggaaataccattaagtaccttcgggttcctgatgaggttattgacaaagtccag
gaagaaaccaaaacccgcaccgatcgcaaaccacctggtgtgggacgcggaagaggaaga
ggtagggaggatggtcctggtggccgtgggcgtggctttgatgaaggtggggcgagaggg
cgaggcagggccggtccaggtggaaggtctggtggaaacagagggcgaggtagaggttga
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integrated database retrieval system