Lotus japonicus: 130741466
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Entry
130741466 CDS
T04348
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130741466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130741466
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130741466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_14
TPR_16
TPR_11
TPR_19
TPR_8
TPR_12
TPR_9
ARM_TT21_C
TPR_17
BTAD
TPR_7
Sel1
TPR_NPHP3
TPR_10
TPR_5
Motif
Other DBs
NCBI-GeneID:
130741466
NCBI-ProteinID:
XP_057450381
LinkDB
All DBs
Position
2:complement(95547786..95569277)
Genome browser
AA seq
1181 aa
AA seq
DB search
MDSQTHTEEEGAEHLFRRLQDSPDDASLHFDIGLFLWDKGGEAKENKEKAAEHFILSAKL
NPKNGESFKYLGHYYGRVSLDTQRALKCFQRAIALNPDDSESGEALCNLLDQEGKDSLEV
AVCLEASQMSPRAFWAFRRLGFLQVHQNKWSEAVQSLQHAIRGYPKCADLWEALGLAYQR
LGRFTAAVKSYGRAIELDNTMVFALVESGNISLALGSFKKGVEQFQQALEISPDCVPAQY
GHALGLLGLAKDCINLGAYQWGASLLEEASEVSWGSAYSFRNISCIWKLHADIKLAYARC
YPWIEDVQEMESDKEAFTASIVAWRKTRFLAARHARFSYQRALHLSPWQANIYADIAITS
NLMTSLNKNDNQELNDACRQLAEKMTMGALLLEGANYEFWVALGCLSDHNALNQHALIRG
LQLNGSLAIAWGYLGKLYYKAGEKQLARHVFDRARSIDPGLALPWASMSAESCVSRELAP
DEAFQSCSRAVQIMPLAEFQIGLTKLALLSGHLSSSQVFGAIEQAMQHSPYYPESHNLHG
LVCEARKDYKSAATLYRLARHAISSGSWSIQNSHIRDISINLARSLSKAGNAADAVQECE
NLKKEGSGALDEEGLQVYAFSLWQLGENDLALSVVRNLVANLSSMEKTYVATSICFICRL
VYFISGLDAVITGIVKMPKELVGSSKVCFVVSAINALDGANRLGFVVSSTRYFLKNHEEI
ARMHFLVALGKLVKNDSDCCLDIQSAVAHLRKALHMFPNSNLMRNLLGYLLLSSKELNNC
HVATRCCKLDHFDLCDQGLKSASDIHGAEAVACCAAGNPKLTFPTCMKQCSSHPGVIRYL
QRCFHQKPWSHDARYLLILNYLQSARERRFPHHLCRILNRLIHYSLSNELNSKTETLYQY
SHFQLLLCASEISLQRGNHMTCITHAKKASQLVLPDDYIFFAHLLLCRVYAMKGDRLNFQ
KEYIRCFELKTDCHIGWICLKLMECQYEMLINSNFMDLSIEECIEKGGNRWMAVYNLVKG
MVSLQRRDLLSAEEFMAQACSLVGFDSSVFLCHGAICMELVRQCGGPQFLSQAVKSLTKV
YELSLAPLPFTSILVAQAEGSLGSKERWDRNLHLEWCTWPSEMRPAELYFHMHLLARQLK
VGLRTTSNVESYQSPLRWVIRAIHINPSCMRYWRILQKLTE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atggactcccaaacacacacagaggaagaaggagcggaacatctcttccgacgcttgcag
gattctccggatgatgcctcactgcattttgatattggcttgttcttatgggacaaagga
ggagaagctaaggaaaacaaggaaaaagctgccgaacatttcattctctcggccaaattg
aaccctaagaatggagaatctttcaaatatctgggtcattactatggacgcgtttccctt
gatactcagagagccctcaagtgttttcaacgagccatcgctctcaatcctgatgattcc
gagtctggggaagctctgtgcaatttacttgaccaagaaggaaaggacagtctggaggtg
gcagtatgcctggaagcttctcaaatgtcaccaagagctttctgggcttttcgcagattg
ggattcctgcaggttcaccaaaataaatggtcagaagctgttcagagtcttcaacatgcc
attcgaggatatcctaaatgtgctgatctgtgggaagccttggggcttgcttatcagcga
ctgggaagatttactgcagctgtgaagtcttatggccgtgcaattgaattagacaacacg
atggtctttgctttggttgaaagtggaaacatctctttagcacttggttcatttaaaaag
ggagttgaacaatttcaacaagctttggagatttcaccagattgcgtgcctgcacaatat
ggtcatgctttggggctacttggtttggcaaaagattgcatcaacctaggagcatatcag
tggggggcttcattgttagaggaagcatctgaggtttcttggggaagtgcttattctttt
cggaatatctcgtgtatttggaaactacatgctgatattaagcttgcatatgcaagatgt
tacccttggattgaggatgtccaagaaatggaatctgataaggaagctttcactgcttct
atcgttgcttggaggaagacccgttttctggctgcaagacatgctagattttcataccaa
cgagccctgcacttgtctccatggcaagcaaacatctatgctgatattgcaataacttca
aatcttatgacctcattgaacaaaaatgacaaccaagaattaaatgatgcatgcaggcag
ctagcagagaagatgaccatgggagccttgctacttgagggtgccaattatgagttctgg
gtggcattgggatgtttgtctgatcataatgcactcaatcaacatgctttgattagggga
ttgcaattaaatggatctctagcgattgcttgggggtatcttggaaagctgtattataaa
gcgggtgagaagcagttggcaagacatgtgtttgatcgtgctagaagtattgatcctggt
cttgcattgccatgggcaagcatgtcagctgagtcttgtgttagtagggagcttgcacca
gatgaagcatttcagagctgttcccgagctgtgcagatcatgcctttagctgaattccaa
attgggctcactaagctagctttgctgagtggccatctttcatcttcacaggtttttgga
gccattgagcaggccatgcagcattctccttattatcctgaatcccacaatttacatggc
ctggtttgtgaagctcgaaaagattacaagtctgctgccactttatataggttagcacgt
catgcaataagtagtggctcgtggagtattcaaaactcgcatatcagggatatatcaatc
aatttggccagatcactttctaaggcagggaatgctgctgatgctgtgcaggaatgtgaa
aatttgaagaaagaaggttcaggggcacttgatgaagaaggtttacaagtatatgctttc
tcattgtggcaacttggtgaaaatgatttggctctctctgtagttagaaatctggttgca
aatctttcttctatggaaaagacatatgttgcgacatccatctgtttcatctgtagatta
gtatacttcataagtggactggatgcagtcatcacaggcattgtgaaaatgccaaaggag
ctagttggaagttcaaaagtttgttttgtggtgtcagctatcaacgctcttgatggagca
aatcgtcttggatttgttgtatcaagtacccggtattttctcaaaaatcatgaagaaatt
gccaggatgcactttttagtagcgcttggtaaactggtgaaaaatgattctgattgctgc
cttgacattcagagtgctgttgcccacctcaggaaagcactacacatgtttcctaacagt
aatttgatgaggaaccttcttggctatctcttactctccagtaaagagttgaacaattgt
catgtggcgacacggtgttgtaaactggaccattttgatctttgtgatcaaggtttaaaa
tcagcttctgatattcatggtgctgaagcagttgcttgttgtgccgctggcaatccaaag
cttacttttccaacttgtatgaagcagtgttcgagtcatcctggagttatcagatacctg
cagagatgctttcatcagaaaccatggagtcatgatgcccgctacttgcttattcttaac
tatctccagagtgcacgtgaacggagatttcctcaccatctttgtcgtatactaaatcgt
ctaattcattattctctctcaaatgaattgaatagcaagacagaaacgctgtatcaatat
agccacttccaacttctactttgtgcttctgagatcagtttacaacgtgggaatcacatg
acctgtatcacccatgccaaaaaggcttctcaacttgtgcttcctgatgattatatattc
tttgcacatctactattgtgccgtgtttatgccatgaaaggtgatcgtctaaattttcag
aaagagtatataaggtgcttcgagctgaagacagattgtcatattggttggatctgtctc
aaacttatggaatgtcaatatgaaatgctaatcaattcaaatttcatggacttaagcatt
gaagaatgcattgaaaagggtgggaatagatggatggctgtgtataacctggtgaaaggt
atggtttccttgcagaggagggatttactctcagcagaagagttcatggcacaggcttgt
tcattggttggttttgatagcagcgtctttctatgtcatggtgcgatctgtatggagctt
gtcaggcagtgtggtggtcctcagttcctatcacaggccgtgaagagccttaccaaagtg
tatgagctatcactggcccccttaccttttacctcaatattggtggctcaagcagaagga
agccttggttctaaggagaggtgggacagaaatcttcaccttgaatggtgcacatggcct
tcagaaatgaggccagcagagctctactttcatatgcatctgcttgcaagacagctgaaa
gttgggcttagaactacatctaacgtagagtcctaccagagtcctctgagatgggttatt
cgggcaattcacattaatccttcttgcatgcgatactggagaattttacaaaagcttacg
gagtag
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