Lotus japonicus: 130747140
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Entry
130747140 CDS
T04348
Name
(RefSeq) uncharacterized protein LOC130747140 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lja
Lotus japonicus
Pathway
lja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130747140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lja03019
]
130747140
Messenger RNA biogenesis [BR:
lja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130747140
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130747140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
130747140
NCBI-ProteinID:
XP_057455961
LinkDB
All DBs
Position
3:5298585..5321044
Genome browser
AA seq
2434 aa
AA seq
DB search
MILHSSSSLTMADFTSTASDQIRFLLNSLNEVNSDSVFHQLSQFTEFGTVGCILLLRTCL
DHFNYVRRDMNDMQNEPILGAVIKHLLDKPNFSTVLSESVKNVEINESFLQSFCNGLQLS
LLEKIAISLALSDSENPDARLCGKNFCMAQIEELGASPGSFSCHEQIHNIIMFLKQSEGL
SKHADSFMQILSLVQFKDTPPYVLTPVLPDEMHEADFLRNMELFHESGENDFDAILADIQ
KEMNMGDIVKELGYGCTVDVLQCKEILSLFLPITDKTLSKLLGAIVRTHAGLEDNQSTFL
TFGTALGYNNLAELPPLSSWNIDVLIDTVKLLAPQTNWVRVIENLDHEGFFLPSEEAFSF
LMAVYKHAYKEPFPLHAICGFVWKNTEGQLSFLKYAASAPPELFTFAHSARQLAYVDAIN
GHKLQSGHANHAWLCLDLLDVLCQLAEKGHASIVRSILDYPLKHCPDVLLLGMAHINTTY
NLFQREVSLAVFPMIVNSAVGSGMILHLWHVNPNLVLRGLMDSQNSDVDSITKIVDICQE
LKILSSVLEIIPSYYSIRLAAVASRKEFLDLGKWLSSILTTYKDVFFEECLKFLKEVHFS
GSQNLSGNSFHQPGAVLNLYTETAATLLKVLKSHTDLVTSGLLKEELESLHISIIDSNPR
LQNGGTTDSSASDGYAEDIEAEANSYFHQMFSEQLHINAMVQMLARFKESSVKREKSIFE
CMIQNLFEEYRFFPKYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSK
MFLFGSLALEQFVGRLVEWPQYCNHILQISHLRSTHSEIVALIEQALARISSGHIDGDGA
SHASIIGNHNSAQATFGHVELTGSSVIQPGQPHLSMQLQQRHENSFDDRHKASIGSSSDV
KPLLSTLGQSSVVTPADASSTNKLHSIVSTSSMLSSSPGFVRPSRGATSAKFGSVLNIET
LVAAAEKRETPIEGPGSEVQDKISFIINNISSTNVEAKAKEFDEILKEQYYPWFAQYMVM
KRVSIEPNFHDVYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLG
SWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPW
TMGILGLLVEIYSMPNLKMNLKFDIEVLFKTLAVEMKDVTPTSLLKDRKREIEGNPDFSN
KDVGVSQAQLVSDIKPGLVPPVNQVELPPLEVTNPSNPHMLSPYAGPLHITTGPLIDDEK
VTPLGLSDQLPTAQGLLQATTNPSPFSQLSTQIPNIGTHVIINPKLSGFGLQMHFQRAVP
ISMDRAIKEIVTGIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLSGSLAH
VTCKEPLRTSISNQLRTALQNINIASEILEQAVQLVTNDNLDLGCAVIEQAATDKAISTI
DTEIGQQLSVRRKHREGMGSTFFDANMYQQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVR
LPWQNQSTQNSHSISGGVSIQSGGTGLTGTSGTVSGQMSPGYSVNTGYEGVPRPIDDISE
SNLAPHFSASSVHIRAADSVSQHSLEKDSVASFPSTASTPELHTVDSSDAVKDSGASSQP
PVSSGAMERLGSSFLEPTLTTRDALDKYQLVAQKLEAVVNNDSREADIQGIISEVPEIIL
RCVSRDEAALAVAQKVFKGLYDNATNNIHVFAHLAILTAIRDVCKLAVKELTSWVIYSEE
ERKYNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQILVIEEPKVISE
LQSLVDALAKLATKPGFPESLQQLIEMIKNPAANTSALSASNAGKDDKARQSRDNKGPGP
LAANREDMNNVDSIEPDPAGFRDQVSMLFQDWYRICELPGANDTASTHFILQLHQNGLLK
GDDITDRFFRVLLELAVAHCLSTEVNNSGALQSPQQLPAMSFLAIDIYAKLVFYILKVFN
CALIPIILSLFFWVALPSYRFCSLLEQGSNKLFLLPKILAVTVRCILKDAEEKKASFNPR
PFFRLFINWLLDLGSLEPVTDGANLQILIAFANAFHALQPLKVPAFSFAWLELISHRSFM
PKMVTGNGQKGWPHIQRLLVDLFQFMEPFLRHAELGDPVRFLYKGTLRVLLVLLHDFPEF
LCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVD
AALKAKQMKTDVDEYLKTRQQNSPFLSELKEKLLLSPNEAASAGTRYNVPLINSLVLYVG
MQGIQGRTPHAQSAGMLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTHTH
YFSFILLHLFAESNQEIIQEQITRVVLERLIVNRPHPWGLLVTFIELVKNRMYSFWNRSF
IRCAPEIEKLFESLFESVSRSCGGPKPVDESGWV
NT seq
7305 nt
NT seq
+upstream
nt +downstream
nt
atgattctgcactcctcgtcgtcgctcaccatggccgatttcacctccactgcttccgac
cagattcggttcctgctcaactccttgaacgaagtcaactctgactccgttttccatcaa
ctctctcagttcactgagtttggaactgttggatgcattttgctgcttcggacttgcttg
gatcactttaattatgtcagaagagatatgaatgacatgcaaaatgagccaattctgggg
gcagtcattaagcacctcttggacaaaccaaacttcagcacagtgttgtctgagtcagtg
aagaatgtagaaattaatgaaagctttctccaaagtttttgtaacggattgcagttgtcc
ttattggaaaaaattgccatcagcctcgctttgtcggattccgaaaatcccgatgccagg
ttatgtggaaagaatttttgcatggctcagattgaggaattgggtgccagccctggttct
tttagttgccatgaacaaattcacaatattatcatgttcctcaagcagtctgagggtctt
tccaagcatgcggactccttcatgcagatattgtcactggtgcagttcaaggacacacca
ccttatgttttgactccagtgctaccagatgagatgcatgaggctgattttttaaggaat
atggagttgttccatgagtctggagaaaatgatttcgatgctattttggctgacatacag
aaggaaatgaacatgggagatattgtgaaggaactaggctatggctgcacggttgatgtc
ttacaatgtaaggagatattgtcgctcttcttacctataactgataaaacgctctcgaaa
ttacttggtgctattgttcgtacccatgctgggctggaggacaaccagagcacattctta
acttttggcacggcccttggatacaacaacttggctgagttgccgccactgagctcttgg
aatattgatgtcttgatagatacagtcaaactccttgcacctcagacaaattgggtacgg
gtcattgaaaatctagatcatgaaggatttttccttcctagcgaagaagctttttctttt
ctcatggctgtatataaacatgcctataaggagccatttcctctccatgcaatctgtggg
tttgtctggaagaatacagagggtcagctgtctttcctcaaatatgccgcatcagcaccg
ccagaattgtttacctttgcacactctgcaagacagctggcatatgttgatgcgattaat
ggacacaagcttcaaagtggacatgcaaatcatgcctggctgtgtcttgaccttttggat
gttctctgccagctagctgagaagggtcatgccagcattgttcgatctatccttgattat
ccccttaaacactgtccagacgtcttgcttcttgggatggcacacattaatactacttac
aatctcttccagcgtgaagtatctctggctgtttttcccatgatagtaaatagtgctgta
ggcagtggaatgattctacacctttggcatgttaatcccaatctggtcttgcgagggctt
atggattctcaaaacagtgatgtagacagcattactaaaattgtggacatttgccaagag
ctaaagattctatcgtcagtgctggaaattattccctcttattatagtataagattagca
gctgtagcttcaagaaaagaatttcttgatcttgggaagtggttgagtagcatcttgact
acgtacaaggatgtcttctttgaggagtgcctcaagttcttaaaggaagtccatttttca
ggatcacagaacctctctggcaattcttttcatcagcctggtgctgttctgaatctctat
actgagacagctgctaccctcttgaaggttcttaaatctcatactgacttggttacatct
ggactacttaaagaggagcttgagagtttgcacatatctattatagattcaaatccaagg
ctccaaaatggtgggactactgattcctctgcttctgatggatacgcggaggacattgaa
gcagaagcaaactcctacttccatcaaatgttttctgaacagttacacattaatgcaatg
gtgcaaatgcttgcccgattcaaggaatcttctgtgaagagggaaaaatcaatatttgag
tgcatgattcaaaacttgttcgaggagtatcggtttttccccaagtatcctgaaaggcaa
ctcaaaattgctgcagtcctatttggttctgtgatcaagcatcagcttgtaactcatctc
tctctggggattgcgcttcgttatgttcttgatgcattgcgcaagcctgcagattcaaaa
atgttcttgtttggaagtctggcactggagcagtttgtgggtcgtcttgttgagtggcct
cagtattgcaatcacattctgcaaatttcccatttgcgcagtacgcattcggaaatagtt
gctttaattgaacaggctcttgccaggatttcctctggccatatagatggagatggggcg
agccatgcttccataattggtaaccataattctgcacaggctacatttggtcatgtggag
ctcactggctctagcgtgatacaacctggacagccacatttgtctatgcaacttcaacag
agacatgaaaattcctttgatgatcgtcacaaagcctccattggttcatcttctgatgta
aaaccactcttatctactctaggtcaatcttcagtagttacacccgctgatgcttctagt
actaataagttacatagcatagtcagcacctcgtcaatgctatcttcttctcctggattt
gttcgtccttcccggggagctacttctgccaagtttggatctgtcttgaacattgaaact
ttggtcgccgctgctgagaaaagagaaactcctattgagggtccaggatcggaagttcag
gacaagatatcatttataattaataatatatcatctaccaatgttgaagctaaagccaaa
gagttcgatgaaattttgaaagagcagtactatccatggtttgcacagtatatggttatg
aaaagagtgagcattgagccaaattttcatgatgtgtacctgaaattccttgataaagtt
aattcaaaggctttgaacaaagagattgtgcaggcaacttatgaaaattgcaaggttctt
ttaggatcagaactcataaagtcaagttcagaagagcgctctctgctgaaaaatctgggg
agctggcttggaaagttgacaattggtcgaaatcaggttttgagggctcgtgaaattgac
ccaaaatctttgattatagaggcatatgagaaggggctgatgattgctgttattccattt
acttcaaagatcctcgaaccatgccagagcagtcttgcatatcagccccctaatccttgg
accatgggcattttgggattgcttgttgagatttattcaatgccaaacctaaaaatgaac
ctcaagtttgacatagaggtattgttcaaaactcttgccgtagagatgaaggatgtcaca
ccaacttctctcctgaaggatcgcaaaagagaaattgaagggaatcctgatttttctaat
aaagatgttggggtgtctcaagcacaactggtttctgatataaaacctggccttgtaccg
cctgtaaatcaagtggagttaccaccgcttgaagtcacaaatccatccaatccacatatg
ttgtctccgtatgctggtcctctacatataaccacgggaccattgattgatgatgagaaa
gtaacacctctgggcctctctgatcaacttccaaccgctcaaggactgttacaagccact
actaacccatcaccttttagccagctctcaacacagatccctaacatagggactcatgtt
attatcaatccaaagctcagtggttttggattgcaaatgcattttcagagagcggtacct
atttcaatggatagagctatcaaagagatagtcactggtattgtgcagcgcagtgtttcc
atagcaacacaaacaactaaggagcttgttttgaaggattatgctatggaatcagatgaa
acacgtatattaaatgctgcacatttgatggttgctagtctgtccggaagtttggctcat
gtcacatgcaaagaacctttacgaacatcaatatcaaaccaactgaggacggcacttcag
aatataaatattgcaagtgaaatcttggaacaagctgtccaacttgtcaccaatgataat
cttgatcttggttgtgctgtcattgaacaggctgctaccgataaggcaataagcaccata
gatacagagattggtcaacaactttctgtgagaaggaagcatcgagaaggtatgggctct
acattttttgacgcgaacatgtatcaacaaggttcaatgggtggtgttccagagcccctt
cgacccaaacctggtcagctgtccctctcacaacagcgcgtttatgaggactttgttcgg
cttccgtggcaaaaccagtctacccagaactcacattctatatctggtggtgtttctatt
caatctggaggtactggtctcactggtaccagtggtactgtatccggacaaatgagccct
ggctactctgtgaacacaggatatgaaggggtccctcgaccaatagatgatatttcagaa
tctaatttggctccgcattttagtgcttcctctgttcacatcagagccgctgacagtgtt
tcccagcatagtctggagaaagactctgttgcctcatttccttcaactgcttccacccct
gaattacatacagtggattcttctgatgctgttaaagattctggagcttcttcacagcca
ccggtttcatcaggtgccatggagcgcctcggaagtagcttcttggagcctactctcact
acacgcgatgctttggataagtaccaacttgtagcacaaaagttggaagctgtcgtcaac
aatgattcccgggaagcagatatacagggcatcatttctgaggttcctgagatcatactc
agatgtgttagtcgagatgaggctgctttagctgttgctcaaaaggttttcaagggttta
tatgacaatgcaactaacaacattcatgtctttgctcatcttgctatcctaactgccatt
cgtgatgtttgcaagcttgctgtcaaggaacttactagttgggtaatttattcagaagaa
gaaaggaaatataacaaagatattactgttggcctcatccgcagtgaattgctaaatctg
actgagtacaatgttcatatggcaaaacttattgatgggggaaggaacaaggctgctact
gagttttctatctctcttctgcaaatcctggttattgaggaacctaaagttatttcagaa
cttcagagtctcgttgatgctttggcaaagcttgccaccaagcctggattccctgaatca
ttacaacagcttattgagatgataaagaaccctgcggctaatacttctgctctatctgct
agtaatgctggaaaagatgataaggcaaggcaatcaagagacaataagggtcctggtcca
cttgctgcaaaccgggaagacatgaacaatgtagattctattgaaccggatcctgctgga
ttccgtgaccaggtttccatgttgttccaagattggtataggatatgtgaacttccaggt
gccaatgatacagcttctacccatttcatcttacagttgcatcagaatgggttgcttaag
ggagacgacataacagatcgctttttccgagtgttgctggaacttgctgttgcacattgc
ctatccactgaggtgaataattctggggcattgcagtctcctcagcagctgccagcaatg
tcatttctcgcaattgatatttatgcaaagcttgtcttctatatcttgaaggttttcaac
tgtgctcttattcctataatcctatctcttttcttttgggtagctttaccttcttaccga
ttttgttctttgttggaacagggatcaaacaaactattccttcttcctaagattctggca
gttactgttagatgcattctaaaagatgcggaggaaaagaaggcctctttcaatccaaga
ccatttttcagattgttcatcaactggcttctggatcttggatcacttgaacctgttact
gatggtgcaaatcttcagattttgattgcttttgccaatgcatttcatgctttgcagccc
ctcaaagttcctgcattcagttttgcctggcttgagttgattagtcataggagcttcatg
ccaaaaatggtgacgggtaatggtcaaaaaggttggcctcatatccaaaggttgcttgtg
gatttgttccaattcatggagccttttctgaggcatgctgaacttggagacccggttcgt
tttctctataaaggcactcttagggtgctcttggtgctacttcatgacttcccagagttc
ctatgtgactatcactttaccttttgtgatgttatccctccaagttgcattcagatgcga
aatatcattcttagcgcatttccacgtagtatgaggctaccagatccttccactcccaat
ttgaagattgatttgcttcaagaaataactcaatcgcctcgcatactatcagaggttgat
gcagcacttaaagcaaagcagatgaaaactgatgtagatgaataccttaagacaaggcaa
cagaattctccatttttgtctgaactgaaggagaagctgctcctctcacccaatgaagct
gcctcagctgggacccgttacaatgtgccactaattaactcccttgtgttgtatgtagga
atgcagggtattcagggacgaactccgcatgcacagtcagccggaatgttggctgtattt
tctgttggtgctgcattggatatttttcagacactaattgtggacttggacacggaaggg
cgttaccttttcctaaatgctattgctaaccaactgcgttatcccaatactcacacacac
tacttttccttcatcctgctccatttgtttgcagagtctaaccaggaaattatccaagaa
caaattacaagagtcgtgttagaacgcttaattgttaatcgacctcatccttggggtctc
ctggttacttttattgagctggtcaagaatcgcatgtatagcttctggaacagatctttc
ataagatgcgcgccagagatcgaaaaactatttgaatcactatttgaatcagtctcaaga
tcttgtggaggtccaaaaccagtggatgagtctggatgggtctga
DBGET
integrated database retrieval system
