Lactobacillus johnsonii DPC 6026: LJP_0297
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Entry
LJP_0297 CDS
T01960
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ljh
Lactobacillus johnsonii DPC 6026
Pathway
ljh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ljh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LJP_0297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljh03021
]
LJP_0297
03400 DNA repair and recombination proteins [BR:
ljh03400
]
LJP_0297
Enzymes [BR:
ljh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LJP_0297
Transcription machinery [BR:
ljh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LJP_0297
DNA repair and recombination proteins [BR:
ljh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LJP_0297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEB92633
LinkDB
All DBs
Position
339128..342766
Genome browser
AA seq
1212 aa
AA seq
DB search
MFSLLGHAVNYGSHRTRRSFSRIKEVLKLPNLTDVQTQSYKWFLNEGIREIFDDIMPISD
FSGKLSLEFVDYKLLKPKYTLEEARDHDANYSAPLHVTLKLTNHETGEIKTQDVFFGEFP
LMTDSGTFVINGAERVIVSQLVRSPGVYYHSDFDKNGRQIFGATVIPNRGAWLEYETDAK
DLAYVRIDRTRKLPLTVLIRALGFGSDSEIADMFGESDSLRFTLEKDIHKNPADSRVAEA
LKDIYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLLRQTLAE
TLADPDTGEIIAKKGDVVTHELLDKLSPYLDRDDFKMVTYEPSKEGVLPDPVTVQEIKVY
SKVDPERVVKLMSNGHIADDVKHLTPADVLASINYFFDLQDNIGTTDDIDHLGNRRIRRV
GELLQNQFRIGLARMERVVRERMSIQDISTVTPQQLINIRPVVASVKEFFGSSQLSQFMD
QNNPLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLA
TYAIVNKYGFIETPYRRVSWDTHKVTDKIDYLTADVEDNYIIAGANARLNEDGSFKDKIV
LARHKEDNLEVTPDKIDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLIN
PHAPIVGTGMEYRAAHDSGDALVAKAPGVVEYVDANEIRIRRDDDTLDKYVLEKFRRSNA
TKNYNQTPAVKQGERVVADEVIADGPAMENGELALGQNPIIAFLTWNMYNYEDAVMISER
MVKDDVYTSIHIEDYESEARDTKLGPEEITREIPNVGEDALKDLDEEGIVRIGAEVQDGD
ILVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQNVQVFTREAGDE
LPPGVNKMVRVYIVQKRKIQVGDKMSGRHGNKGTIALVCPEEDMPYLPDGRPVDICLNPM
GVPSRMNIGQVLELHLGIAAKQLGIHVATPVFDGASEDDMWNMVREAGIGKDGKTVLYDG
RTGEPFHNRVSVGIMYYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGL
DIKVLDMDHKEIELRDMDDDSNDHFNIDTLSKLAEQQEKKKLAEEAAKKDDKPDEPVDES
DSSTSSDDKVSK
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgttttctttgttaggacacgctgtgaactacggtagtcaccggacaagacgtagcttc
tctcgaattaaagaagtattgaagttacctaacttgactgatgtacaaacgcaatcttac
aagtggtttcttaatgaaggtattcgtgaaatatttgacgacattatgccgatttcagac
ttttcaggaaaactttctttagagtttgttgattacaagctcttgaagccaaaatacact
cttgaagaagcacgtgatcacgatgctaattactctgctcctcttcatgtaactttgaag
ttaaccaaccatgagaccggagaaattaagactcaagacgtcttctttggagaattccca
ttaatgactgattcaggaactttcgttattaatggtgctgagagagttattgtttctcag
cttgttagatctcctggtgtttactaccattcagattttgataaaaatggtcgccaaatt
ttcggtgctacagttattcctaaccgtggtgcatggcttgaatatgaaactgatgctaaa
gatttagcttatgttcgtatcgatcgtactcgtaagcttcctttaactgttttaattcgt
gctttaggatttggttctgatagtgaaattgcggatatgtttggtgaaagtgattcactt
cgtttcactttagaaaaagatatccacaagaatcctgctgattctcgcgttgcagaagca
ttaaaggatatttacgaaagattacgcccaggtgaacctaagacaactgattcatctcgt
tcacttttatatgctagattctttgatccaagaagatatgatttagctccagttggtcgt
tataagatcaataagaaactttctttaaagaatcgtttactaagacaaactttggctgaa
actttagctgatcctgatactggtgaaatcattgctaaaaagggtgacgttgttacccac
gaacttcttgataaattatcgccttacttagatcgtgatgactttaagatggtaacttat
gaaccttcaaaggaaggtgtgttacctgatccagtaacagttcaagaaattaaggtatat
tctaaagttgatcctgaacgtgtagttaagttaatgtctaacggccacattgcagatgat
gttaaacatttaactcctgctgatgtattggcatcaattaactacttcttcgaccttcaa
gataatattggtactactgatgatattgaccacttaggtaaccgtcgtattcgtcgtgta
ggtgaattacttcaaaaccaatttagaattggtttagcaagaatggaacgtgttgtacgt
gaaagaatgtcaatccaagacatttctactgttacaccacaacaattaatcaatattcgt
cctgttgttgcttcagttaaggaattctttggttcatcacaattatcacaatttatggat
caaaacaacccacttggtgagttaactcacaagcgtcgtatgtcagccttaggacctggt
ggtttgtctcgtgaccgtgctggatatgaagttcgtgacgtgcactatactcactatggt
cgtctatgtcctattgaaactcctgaaggacctaacattggtttgattaactctttagca
acttacgctattgttaacaagtatggtttcattgaaacaccatatcgtcgtgtttcttgg
gatactcacaaggttactgataagatcgactacttaactgctgatgtagaagataattac
attattgctggtgctaacgctcgcttaaatgaagatggttctttcaaagataagattgtt
ttagcccgtcataaggaagataacctagaagttacccctgataagattgactacatggac
gttattcctaagcaagtagtttcagtaacttctgcatgtattcctttccttgaaaacgac
gactctaaccgtgctttgatgggggctaaccaccaacgtcaagctgttccattgattaat
ccacatgcaccaattgttggtactggtatggaataccgtgcagcacatgactctggggat
gcattagttgctaaagctcctggtgtggttgaatatgttgatgcaaacgaaattagaatt
agaagagacgatgatactttagataagtatgttcttgaaaaattccgtcgttcaaacgca
actaagaactacaaccaaactccagctgttaagcaaggtgaacgagtagttgcagatgaa
gttattgctgatggtccagcaatggaaaacggcgaattagctctaggtcaaaacccaatc
attgcattcttgacttggaacatgtacaactatgaagatgccgttatgatttctgaacgt
atggttaaagatgatgtctacacttctatccatattgaagactatgaatcagaagctcgt
gatactaagttaggacctgaagaaatcacacgtgaaattccaaatgttggtgaagatgca
cttaaagaccttgatgaagaaggtattgttcgcatcggtgctgaagttcaagatggtgac
atcttagttggtaaagtaactcctaagggtgtgactgaattatcagctgaagaacgtttg
cttcacgctatttttggtgaaaaagctcgtgaagttcgtgatacttccttgcgtgtacct
cacggtggtggcggtattgttcaaaacgttcaagtattcactcgtgaagcaggcgacgaa
ttgccacctggtgtaaataagatggttcgtgtttacatcgttcaaaaacgtaagattcaa
gtcggtgacaagatgtctggtcgtcacggaaacaagggtactattgccttagtttgtcct
gaagaagatatgccatacttaccagatggtcgtccagtagatatttgtttgaacccaatg
ggtgtgccttcacgtatgaacattggacaggttcttgaattacacttaggtattgctgct
aagcaactaggtattcacgttgctactccagtatttgatggtgcttctgaagatgatatg
tggaatatggttcgtgaagctggtattggtaaagatggtaagactgttctttatgatgga
cgtactggtgaaccattccacaatcgtgtttcagtaggtattatgtactacttgaagttg
actcacatggttgatgataagatccacgcacgttcaattgggccttactcacttgttact
caacaaccacttggtggtaaagcacaatttggtggtcagcgtttcggtgaaatggaagtt
tgggctcttgaagcttatggtgctgcttacacactacaagaaatcttaacttacaagtca
gatgacgttgtaggtcgtgttaaggcttatgaagctattgttaagggcgaaagaattcca
aaacctggtgttccagaatcattccgcgttcttgttaaagaactacaatctcttggttta
gatatcaaggtgttggatatggatcataaagaaattgagttacgtgatatggatgatgac
tctaacgatcatttcaacatcgatactttatctaaacttgctgaacaacaagaaaagaag
aagttagctgaagaagctgcaaaaaaggatgataagccagatgaacctgtagatgaaagt
gattcttctacttcatctgatgataaggtttctaagtaa
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