Lactobacillus johnsonii NCC 533: LJ_0332
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Entry
LJ_0332 CDS
T00158
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ljo
Lactobacillus johnsonii NCC 533
Pathway
ljo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ljo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LJ_0332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljo03021
]
LJ_0332
03400 DNA repair and recombination proteins [BR:
ljo03400
]
LJ_0332
Enzymes [BR:
ljo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LJ_0332
Transcription machinery [BR:
ljo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LJ_0332
DNA repair and recombination proteins [BR:
ljo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LJ_0332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AAS08318
UniProt:
Q74L95
LinkDB
All DBs
Position
370819..374448
Genome browser
AA seq
1209 aa
AA seq
DB search
MLGHAVNYGSHRTRRSFSRIKEVLKLPNLTDVQTQSYKWFLNEGIREMFDDIMPISDFSG
KLSLEFVDYKLLKPKYTLEEARDHDANYSAPLHVTLKLTNHETGEIKTQDVFFGEFPLMT
DSGTFVINGAERVIVSQLVRSPGVYYHSDFDKNGRQIFGATVIPNRGAWLEYETDAKDLA
YVRIDRTRKLPLTVLIRALGFGSDSEIADMFGESDSIRFTLEKDIHKNPADSRVAEALKD
IYERLRPGEPKTTDSSRSLLYARFFDPRRYDLAPVGRYKINKKLSLKNRLLRQTLAETLA
DPDTGEIIAKKGDVVTHELLDKLSPYLDRDDFKMVTYEPSKEGVLPDPVTVQEIKVYSKV
DPERVVKLMSNGHIADDVKHLTPADVLASINYFFDLQDNIGTTDDIDHLGNRRIRRVGEL
LQNQFRIGLARMERVVRERMSIQDISTVTPQQLINIRPVVASVKEFFGSSQLSQFMDQNN
PLGELTHKRRMSALGPGGLSRDRAGYEVRDVHYTHYGRLCPIETPEGPNIGLINSLATYA
IVNKYGFIETPYRRVSWDTHKVTDKIDYLTADVEDNYIIAGANARLNEDGSFKDKIVLAR
HKEDNLEVTPDKIDYMDVIPKQVVSVTSACIPFLENDDSNRALMGANHQRQAVPLINPHA
PIVGTGMEYRAAHDSGDALVAKAPGVVEYVDANEIRIRRDDDTLDKYVLEKFRRSNATKN
YNQTPAVKQGERVVADEVIADGPAMENGELALGQNPIIAFLTWNMYNYEDAVMISERMVK
DDVYTSIHIEDYESEARDTKLGPEEITREIPNVGEDALKDLDEEGIVRIGAEVQDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQNVQVFTREAGDELPP
GVNKMVRVYIVQKRKIQVGDKMSGRHGNKGTIALVCPEEDMPYLPDGRPVDICLNPMGVP
SRMNIGQVLELHLGIAAKQLGIHVATPVFDGASEDDMWNMVREAGIGKDGKTVLYDGRTG
EPFHNRVSVGIMYYLKLTHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKAYEAIVKGERIPKPGVPESFRVLVKELQSLGLDIK
VLDMDHKEIELRDMDDDSNDHFNIDTLSKLAEQQEKKKLAEEAAKKDDKPDEPVDESDSS
TSSDDKVSK
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
ttgttaggacacgctgtgaactacggtagtcaccggacaagacgtagcttctctcgaatt
aaagaagtattgaagttacctaacttgactgatgtacaaacgcaatcttacaagtggttt
cttaatgaaggtattcgtgaaatgtttgacgacattatgccgatttcagacttttcagga
aaactttctttagagtttgttgattacaagctcttgaagccaaaatacactcttgaagaa
gcacgtgatcacgatgctaattactctgctcctcttcatgtaactttgaagttaaccaac
catgagaccggagaaattaagactcaagacgtcttctttggagaattcccattaatgact
gattcaggaactttcgttattaatggtgctgagagagttattgtttctcagcttgttaga
tctcctggtgtttactaccattcagattttgataaaaatggtcgccaaattttcggtgct
acagttattcctaaccgtggtgcatggcttgaatatgaaactgatgctaaagatttagct
tatgttcgtatcgatcgtactcgtaagcttcctttaactgttttaattcgtgctttagga
tttggttctgatagtgaaattgcggatatgtttggtgaaagtgattcaattcgtttcact
ttagaaaaagatatccacaagaatcctgctgattctcgcgttgcagaagcattaaaggat
atttacgaaagattacgtccaggtgaacctaagacaactgattcatctcgttcactttta
tatgctagattctttgatccaagaagatatgatttagctccagttggtcgttataagatc
aataagaaactttctttaaagaatcgtttactaagacaaactttggctgaaactttagct
gatcctgatactggtgaaatcattgctaaaaagggtgacgttgttacccacgaacttctt
gataaattatcaccttacttagatcgtgatgactttaagatggtaacttatgaaccttca
aaggaaggtgtgttacctgatccagtaacagttcaagaaattaaggtatattctaaagtt
gatcctgaacgtgtagttaagttaatgtctaacggccacattgcagatgatgttaaacat
ttaactcctgctgatgtattggcatcaattaactacttcttcgaccttcaagataatatt
ggtactactgatgatattgaccacttaggtaaccgtcgtattcgtcgtgtaggtgaatta
cttcaaaaccaatttagaattggtttagcaagaatggaacgtgttgtacgtgaaagaatg
tcaatccaagacatttctactgttacaccacaacaattaatcaatattcgtcctgttgtt
gcttcagttaaggaattctttggttcatcacaattatcacaatttatggatcaaaacaac
ccacttggtgagttaactcacaagcgtcgtatgtcagccttaggacctggtggtttgtct
cgtgaccgtgctggatatgaagttcgtgacgtgcactatactcactatggtcgtctatgt
cctattgaaactcctgaaggacctaacattggtttgattaactctttagcaacttacgct
attgttaacaagtatggtttcattgaaacaccatatcgtcgtgtttcttgggatactcac
aaggttactgataagatcgactacttaactgctgatgtagaagataattacattattgct
ggtgctaacgctcgcttaaatgaagatggttctttcaaagataagattgttttagcccgt
cataaggaagataacctagaagttacccctgataagattgactacatggacgttattcct
aagcaagtagtttcagtaacttctgcatgtattcctttccttgaaaacgacgactctaac
cgtgctttgatgggggctaaccaccaacgtcaagctgttccattgattaatccacatgca
ccaattgttggtactggtatggaataccgtgcagcacatgactctggggatgcattagtt
gctaaagctcctggtgtggttgaatatgttgatgcaaacgaaattagaattagaagagac
gatgatactttagataagtatgttcttgaaaaattccgtcgttcaaacgcaactaagaac
tacaaccaaactccagctgttaagcaaggtgaacgagtagttgcagatgaagttattgct
gatggtccagcaatggaaaacggcgaattagctctaggtcaaaacccaatcattgcattc
ttgacttggaacatgtacaactatgaagatgccgttatgatttctgaacgtatggttaaa
gatgatgtctacacttctatccatattgaagattatgaatcagaagctcgtgatactaag
ttaggacctgaagaaatcacacgtgaaattccaaatgttggtgaagatgcacttaaagac
cttgatgaagaaggtattgttcgcataggtgctgaagttcaagatggtgatatcttagtt
ggtaaagtaacccctaagggtgtgactgaattatcagctgaagaacgtttgcttcacgct
atttttggtgaaaaagctcgtgaagttcgtgatacttccttgcgtgtacctcacggtggt
ggcggtattgttcaaaacgttcaagtattcactcgtgaagcaggcgacgaattgccacct
ggtgtaaataagatggttcgtgtttacatcgttcaaaaacgtaagattcaagtcggtgac
aagatgtctggtcgtcacggaaacaagggtactattgccttagtttgtcctgaagaagat
atgccatacttaccagatggtcgtccagtagatatttgtttgaacccaatgggtgtgcct
tcacgtatgaacattggacaggttcttgaattacacttgggtattgctgctaaacagctt
ggtattcacgttgctactccagtatttgatggtgcttctgaagatgatatgtggaatatg
gttcgtgaagctggtattggaaaagatggtaaaactgttctttacgatggacgtactggt
gaaccgttccacaaccgtgtttcagtaggtattatgtactacttgaagttgactcacatg
gttgatgataagatccacgcacgttcaattgggccttactcacttgttactcaacaacca
cttggtggtaaagcacaatttggtggtcagcgtttcggtgaaatggaagtttgggctctt
gaagcttatggtgctgcttacacactacaagaaatcttaacttacaagtcagatgacgtt
gtaggtcgtgttaaggcttatgaagctattgttaagggcgaaagaattccaaaacctggt
gttccagaatcattccgcgttcttgttaaagaactacaatctcttggtttagatatcaag
gtgttggatatggatcataaagaaattgagttacgtgatatggatgatgactctaacgat
catttcaacatcgatactttatctaaacttgctgaacaacaagaaaagaagaagttagct
gaagaagctgcaaaaaaggatgataagccagatgaacctgtagatgaaagtgattcttca
acttcatctgatgataaggtttctaagtaa
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