Liolophura japonica (common chiton): 135472822
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Entry
135472822 CDS
T09976
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03013
Nucleocytoplasmic transport
ljp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135472822
09122 Translation
03013 Nucleocytoplasmic transport
135472822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135472822
03041 Spliceosome [BR:
ljp03041
]
135472822
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
135472822
Spliceosome [BR:
ljp03041
]
Complex C
Other components
EJC/TREX
135472822
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135472822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
135472822
NCBI-ProteinID:
XP_064608578
LinkDB
All DBs
Position
8:55434629..55478808
Genome browser
AA seq
1558 aa
AA seq
DB search
MAACFVNADVVRSWEKTGKTEFTKTCRKLIESNSTWSLGSKSLKTAMYEICWQVMKGNLK
TEQAISAIGDVMNLQKDIPSLMADVLSIIDLETSTNEDKMQRDRFISVAAACVMFIPEPV
LKERLDHDTLENISLIQSKVQFTQKYVKVKTKLYYKQQKFNLMREESEGYAKVITELNQE
ITDDITPTSTLQTIKSLIGCFDLDPNRVLDVMLESFECRSTLHSYFVPLIKSYMAEQGTI
CHILGFKFHFYQDPADETTPQSLYRVAALLLKHKLVQLEDLYPHLSPADSAIAEQHKKQL
MEAKQYARSKSIVSLADKTEDKEKDIDNKIDLFESNQKLGLIKALIEVEDWPNAKCIMDR
MPPFFASSHKAVSAALCSLIHAIMEPLYRKHTGLPSSVSRKRMRDGSQQPLAVGSINSYQ
GLHRQVFPMLSYLGPSLHNDVLLIAKIIRLGKAFMNMRRDGGISPEDDLAYYGFLTMLDE
VILPSLTLLPCNCSISEELWSLLKLYPYELRYRLYGRWKNETCNVHPALIRAKADCLDRA
KYIMKRLAKENVKPSGRQLGKLSHSSPGTVFEYVLSQIQRYDNFIGPVVDSMKFLTSLSY
DMLTYCIIEAVANPEKERLKHDDTNISLWLQSLANFAGSICKKYQIELTGMLQYVANQLK
AGKSFDLLLLREILQKMAGIEISEEITDDQLEAMSGGELLKQEGGYFSQVRNTKKSSTRL
KDVLLENDLALSLCMLMAQQRDGVIYREGEERHLKLVGKLYDQCQDTLVQFGSFLSMQLS
TEEFVKRLPSIDILVSTFNVPPDAAFFLSRSLYTHGIATKFDELKKIDKSNKQTSSQQKL
QRYLEAVESVMSPVVELVRPLHTPKVWDDLSPQFYVTFWSLSMYDLCPPSTMYEKQLQQL
KSQIDAIEDNRELPQGKKKKEKERCTSLKDKLQEEEKRQNDHVGRVMARLKHEKDTWFLS
RSTKNETITQFLQLCIFPRCCFTASDAVYCAKYIQILHDLKTTNFSTLICYDRIFCDITY
SVTSCTENEAHRYGRFLCAAMDTIMRWHSDQALYDKECASYPGFVTVFRKGAEDSNNKAD
QLDYENYRHVCHKWHFRITKAMVTCLESGNYIQIRNALIILTKILPHYPKILQFGQAVER
RVDRLRQEEKEKRPDIYALAMGYSGQLKAKKSSWVPENEFHLKEKDQQKNQAKAANAKAD
ASKTPAVKEAAAKCPEANGHAAESNNKEKKDGKAPSSVEVRKSTSETDSRHSKGDREKTH
TKISKSKTDVQADERGKHGRDDDERVRTVRVKEEGRVKVKEEKVLRLKEESKELDRASSV
ASSGSHGSQRRSAEPSPHTTEDREPKRRKIEAPVSGSKEKVGASDHEKHKRSPSNDRDRD
KKERKRDHNRSSLENNGKKHYHEERTVTASGSSSKQNGLSDREVLQSSSKSRLREESGPS
RDYDKSKRESRELYSETRRVSTDKDHSAHWDVDEWLASPGEVEGSRSESERVRDDSNRSS
PRERLSSKDLISPKLKRDREVVEDSARSREEKKKIKKEKGERDRSVKDKVRSTKKIRK
NT seq
4677 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttgtttcgtcaatgccgatgttgtgagatcttgggaaaagacggggaaaacg
gagttcacgaagacttgtaggaaactcattgaaagcaactcaacatggagccttggatca
aaatctttaaagactgcaatgtacgaaatttgctggcaagtgatgaaaggaaatctgaaa
acagaacaggccatatctgccataggggatgttatgaatttacagaaagacatcccttcc
ctgatggctgatgtattgagtattattgatctggagacgtcaaccaatgaagacaagatg
cagcgggatcgcttcatctcagtggcagcagcctgtgtgatgtttatccctgagccagtg
ctgaaggagaggttagaccatgacaccctggagaacataagcctgatacagtccaaagta
cagttcacacagaaatacgtcaaggtcaagacgaaactttattacaaacagcagaaattc
aacctaatgcgagaggagagcgaagggtacgccaaagttattactgaactgaaccaagag
attacagatgacatcaccccaacgtcaactttacagaccatcaaatctcttataggttgt
tttgatctggaccctaaccgtgtgctagatgtcatgttggagtcatttgaatgtcgctcg
actctacatagctactttgtgccattgatcaagtcgtacatggctgagcagggaacaata
tgccatatcctaggattcaagttccatttctatcaggaccctgctgatgaaactactcct
cagtcgttgtacagggtggctgctttacttctcaaacacaagcttgtgcagttagaggac
ctgtacccacatctgtccccagcagacagtgccatagcagaacaacacaagaagcagctg
atggaggccaagcagtatgctcgcagtaagagcattgttagtctggctgacaaaaccgag
gacaaggaaaaagacattgacaacaaaatagacctgtttgagagcaatcagaagcttgga
ttgatcaaagctctgatagaggtagaggattggcctaacgccaagtgtatcatggacaga
atgcctccgttctttgcatcctctcacaaagccgtgtctgcagctctctgttctctgatc
catgccatcatggagcccctgtacaggaagcacacaggtcttcccagctctgtatccagg
aagaggatgagggatggcagtcagcagccattggctgtggggtccatcaactcgtatcag
ggtttacacagacaagtgtttcccatgctcagctacctggggcccagtctacacaatgat
gtcctcctcattgccaaaatcatccgtctgggcaaggctttcatgaacatgaggagagat
gggggtatatccccagaggatgacctggcttactatgggtttctcaccatgctggatgag
gtgatcttacccagcctcaccctgcttccctgtaactgctctatctcagaggagctctgg
agtcttctcaaactctacccctatgagctcaggtatcgcttgtatggtcggtggaaaaat
gagacatgtaacgtacaccctgccttaattcgggctaaggcagactgtctggacagagcg
aaatacataatgaaacgtcttgctaaggagaatgtgaaaccctcaggaaggcagctaggc
aaactcagtcacagtagtcccggtactgtgtttgaatatgtgttatcacagatccagaga
tatgacaatttcattggccctgtggtggactcaatgaagtttctaacatctctgtcctat
gacatgttgacatactgtatcattgaagccgtggctaacccagaaaaggagcgtctgaag
cacgatgacaccaatatatcactgtggttacagagtttggccaactttgctgggtccata
tgtaaaaagtaccagattgagctgacaggaatgctacagtatgtagccaatcaactgaaa
gcaggcaaaagttttgacctgctgttgttgagggagatactacagaagatggctggtata
gagatctctgaggagatcacagatgaccagctggaagccatgtcaggaggggagcttctc
aagcaggagggtggatacttctctcaagtgaggaacaccaaaaagtcgtccacaaggtta
aaagatgtattgttggaaaatgatttggcgttgtctctgtgtatgctgatggctcagcag
agggatggggtgatctatcgtgaaggcgaggaacggcatctcaaacttgtgggcaaactc
tatgaccagtgtcaggacaccctggtgcagtttggtagtttcctgtccatgcagctgagt
acagaagagtttgtgaagaggctaccatctatagacatcctggtgtctacattcaatgtc
ccaccagatgctgcattcttcctctccagatctctgtacacgcatggaattgctacaaag
tttgatgaactgaagaaaattgacaaaagtaacaagcaaacatctagtcagcagaagttg
cagagatacttggaggctgtagagtctgtgatgagtcctgttgttgagctggtcagaccg
ttgcacacccccaaagtctgggatgatctcagcccccagttttatgtgacattttggtcc
ttgtccatgtatgatctgtgccccccttctaccatgtacgagaaacaactacaacagctc
aagtcacaaattgatgccatagaggacaacagagaattgccccagggtaagaagaagaaa
gagaaggagcggtgtacaagtctgaaggacaagctgcaggaagaggagaagcggcagaac
gatcatgtgggtcgcgtaatggcaagacttaagcatgaaaaagacacctggtttctctcc
agatccacaaagaatgagacgatcacccagttcctgcagctatgtatctttccgcgctgt
tgcttcactgccagtgatgctgtgtactgtgctaagtacatacagatacttcatgatctc
aagaccaccaacttctccaccctcatctgttacgacaggattttctgtgatattacctat
tcggtgacaagttgcactgaaaatgaggctcatcgttacgggagatttctttgtgcagcc
atggacaccattatgagatggcacagtgaccaggcactctatgataaggagtgtgcgtcc
taccctggctttgtgactgtgttcaggaagggggcagaggacagtaacaacaaggctgac
cagctggactacgagaactacagacatgtctgtcacaagtggcatttcagaataacaaag
gcgatggtgacttgcttagagtctgggaactacatccagatacggaatgccctcatcatc
ctgacaaagattttacctcactatccaaagatattacagtttggccaggctgtagaaaga
agggtggacaggctgagacaagaggagaaagagaagaggccagatatatatgctctagcc
atggggtattctggtcagctaaaggctaagaaatcttcatgggttccagagaatgagttc
cacctgaaggagaaggaccagcagaaaaatcaggccaaggctgccaatgctaaagctgat
gcttcaaagacacctgctgtaaaagaggctgcagctaagtgtcctgaagccaatggtcat
gctgcagagtcaaataataaagagaagaaggatgggaaggctcccagttcagttgaagtg
cggaagtcaacatcagagacagactctaggcacagtaaaggagaccgagagaaaacgcac
acaaagattagcaagagtaagacggatgtgcaggctgacgagcgtgggaagcatggacga
gacgatgacgagagggtgcggaccgtcagggtcaaagaggaaggtcgggtcaaggtcaaa
gaggagaaggttttgcgtttgaaggaggagagtaaagagctggatcgagcgtctagtgtg
gcatccagtggcagccatgggtcacagcgtcgcagtgccgaaccctccccccacacaact
gaggacagagagcccaaaagaaggaagattgaagcacccgtttcaggttcaaaggaaaaa
gtaggtgcgagtgatcacgaaaaacacaagaggagcccatccaatgaccgagatcgggac
aagaaggaaagaaaaagggatcataatcgaagtagccttgagaacaatgggaagaaacac
taccatgaagagcgaacagtcactgcttctgggtcaagcagcaaacagaacggcctctct
gacagggaggtgcttcaatcttccagcaaaagccggctgagggaggagagtgggccttct
cgtgattatgacaagagtaaacgggaatcgcgggagttgtacagcgaaacccggcgagtg
tccacggacaaggatcactctgcacactgggacgtggacgaatggctggcctcgcccgga
gaagtggaagggtccaggtctgagtctgagcgtgtccgcgacgatagcaatcgcagctca
ccacgggaacgcctctcctccaaagatctgatatcacctaaactaaaaagggaccgtgaa
gtggtagaagacagtgctagaagtcgagaagagaaaaaaaaaattaagaaggagaaagga
gagagagacaggagtgtaaaagacaaagtacgatcaacaaagaaaatacgaaaatga
DBGET
integrated database retrieval system
