Liolophura japonica (common chiton): 135474669
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Entry
135474669 CDS
T09976
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135474669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ljp03019
]
135474669
Messenger RNA biogenesis [BR:
ljp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135474669
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135474669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
135474669
NCBI-ProteinID:
XP_064610276
LinkDB
All DBs
Position
9:17744824..17782525
Genome browser
AA seq
2424 aa
AA seq
DB search
MNLDSLSLALSEISYSVANLTKKNFKSSVAEINHLVTHHGAEAERHLFRCLFSYVDFSGD
GKSSGKDFHQTQLLIQEFGNLISKVNFVSILCYAIDCPLHLQKSLKPSSQLFPQVSKVLK
LSRVQDVVFGLALLNSSNPDLRNYAAQFVKQKLPDLIRSYVDADTTVSQEGGLQDVAIEV
IHLLLAHLVKGRDQFGIGADQKEAFLQTLRKDFPRDRVPVVLSPLLYPDIDDISIDKLPD
TTGCHKSIMESSYADMILEAGYGCTATVEECRNTLMQFGVRELTPAAVARVLGMMARSHQ
GLNENVSLQSLNSSALGGGIWGDTKEKADTVGVNTWNVEVFVQVVQDLAPHLNWRDVVSE
LDHASFFVDSKRGLSIIVRGLIKGLTEVFPVELIYRQWKNTEGQLSFIVQSIRNPDIFCL
ADYPCHTVVIDILKTPPDDDKREVAIWKSLDLVEALLRLSEQHNQQVSELFTFPVRNCPD
MLVLALLQISPTWNTLKQELISTLMPIFLGNHPNSAIVLHYAWHCPGLSSTIRTLIMHSM
AEWYMRGEPHDQTRLGRILDVAQDLKALSMLLNASPFAFVIDLACLASRREYLKLDKWLS
DKIREHGEPFIQACANFLKRRCPQLVGGMAKEDPTPQSKSQQLPMETIATMVSCLHTCAN
TGQVQIELSDAIRTMVNNANQILNKVRPAPPGTVGPKSLNPGLPQALPLPTTPVAESKPP
DPMLQQWSTWQSDKKKMDGPGILGPVGLGTSSSVSSSFPQGLMNLNPGPPSPPKGFQGLP
SQTGHVFNAMHSITTQLQNLGMQSTMPTSMPSVMQGPRSTVTSLGALSVQTALKNPANTG
PSGRPRTTGNGGDMSNFFPEMNQQFSKEVEDEANSYFQRIYNHIPHPTMSTDEVLDMLKR
FKDSSNKKERDVYFCMLRSLLEEYRFFPQYPEKELHTTAVLFGGIIEQGLVTYMALGIAL
RYVLEALRKPSGSRMYFFGIAALDRFKSRLKDYPQYCTHLASIPHFNQFPQHLIEYVEYG
ARSQEPPHHPQGAITTRSLTPTVGSLTPALSGLGMPPLTPTPTSAGTPMDGLTTGTATPT
PATPSTPAEATSASPAAPAKSAMPKPSIANATNIDTLLAGQGKEEISVPPESLQDKVFFI
FNNLSLANMSQKSEELKEYITEEFMPWVSQYLVMKRASIEPNFHTLYANFIDALNMPNIS
TNVTKETFRNIKVLLRSDKGVANFSDRALLKNLGHWLGMLTLAKNKPILQIDIDLKALLY
EAYHKGAQELLYVVPFTAKVLESCAKSKVFKPPNPWTMAIMNVLSELHQEQNLKLNLKFE
IEVLCKTLGIDINDLKPGNYLRDPHRLAVLEPQLSGVTKILSPQPDLDPVVSMSTPPAVP
VTVGGSASTSTPSVSLPPQPQFDFNDIVTSSLSGLAPHIIVSDHPLWQANPQLKLSVKAA
VERSVQELLPPVVERAIKIALNTCEQIVKKDFALDPEENRMRAAAHHMVRNMTAGLALIT
CREPLCTCINNNLKTTFTSILRGLTQPQKEMVEQAAQMVGQENVELACAFIQKTAVERAI
PEMDKRLATEIDLRKHARNEGRRYCDPVVLTYQAERMPEQIRLKVGGVTPQQIAVYEEFA
RNIPGFLPTVTHTSLPSGIARPMPVRDQQSFATDEISQMYDKIASEIKQHVQMVALPPGN
SHFVQLHSLMEAVLLARSSHEIVSALALLQKAVEGLLDHFTAMPNDNELMLRFRDCHLLV
LRGLQDTRAYGPQWTNKQVTRCLIESRDDRKYNVEAMDCLIRAHFVNMPQYDSHLASLME
NGLNYMAVAFAMQLVQRYCVDDKHNSQISEGDFFNTIETLARIASHSRQAPEGLSALLET
IRQNNDGGLLDRTPNQGGPTIMMQTGISQAREFDDPPGLHEKTEYLLREWVNMYHSPAAG
RDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVDLCYRALGEQSQNPTLVRAKCF
HTLDAFVRLIALLVKYSGDNSNTVTKINLLNKVLGIVAGVLYQDHEVRQSDFQQLPYHRI
FIMLFIELNAPEPILDTINLQVLTAFSNTFHILRPVKAPGFAYAWLELVSHRVFIGRLLA
LTVQQRAWGMYAQLLVDLFKFLSPFLRNADLTKPTQLLYKGTLRVLLVLLHDFPEFLCDF
HYAFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLQDIAQPPRILTSFVSMIQ
PPSFRKNLESYLKTRSPVTFLSELRGNLQVDEPGMRYNIPLINALVLYVGTQAIAYINSK
GLTPSMSTIAHSSHMDIFQNMGVSLDTEGRYLFLNAIANQLRFPNSHTHYFSCTLLYLFA
EANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPVFKFWNHDFVHCAPEIEKLF
ESVARSCMPKQTQSVREQETAEIH
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactcgctatctcttgccctctctgaaataagttattcagtggcaaatcta
acaaagaaaaatttcaagtccagtgttgctgaaataaaccacctggtcacacaccacgga
gctgaagcagaaaggcatctgtttcggtgtctattttcctatgttgatttcagtggggat
ggtaaaagtagtggcaaggactttcatcagacacagttgttgattcaggaatttgggaac
cttatcagcaaagtgaattttgtgtctatcttgtgctacgctattgactgtcccctccat
ctacagaagagtttaaaaccatcatcacaactcttcccacaagtcagcaaggttctcaag
ctctcccgcgtacaggacgttgtttttggacttgccttactgaattcatcaaacccagac
ctgagaaactacgcagctcaatttgtgaaacaaaaattaccagaccttatccgctcctat
gtcgatgccgacaccacagtaagtcaggaggggggactgcaggacgttgccatcgaggtg
attcacctgttgttagcccacctggtcaaaggcagagatcaattcggtatcggtgctgac
cagaaagaggctttccttcaaacgctcagaaaagacttccctcgagacagagtacctgta
gtactaagccctcttctatacccagacatagacgatatttccattgacaagttgccggat
acaactggctgtcacaagagtatcatggaaagctcttatgctgatatgatattggaagct
ggatatggatgcacggcaacagttgaagaatgtcgaaacaccctgatgcagtttggagtg
cgggagctgactcctgcagctgtagcacgtgtgctggggatgatggcgcgctctcaccag
ggcctgaatgaaaacgtctccctacagtctttgaacagcagtgcactaggaggaggtata
tggggggacaccaaggagaaggctgacacagtcggtgtgaacacctggaacgtggaggtg
ttcgttcaggtggttcaagacctggcgcctcaccttaactggcgagatgtggtatcggaa
ctagaccatgcaagcttctttgtggacagcaagcgtggactaagtatcatcgtgaggggc
ctcatcaaggggctgaccgaggtgttccctgtggagctaatctacagacagtggaagaac
acagaaggacagttatctttcatcgtacagtctatcagaaatcctgacatcttttgtttg
gctgattatccatgtcacactgtggtgattgacatcctcaaaacacccccagatgatgac
aagagggaagtggcaatatggaaatctctggatctggtagaagccttactgagactgtca
gagcagcacaaccagcaagtgtcagaactgttcaccttccctgtgagaaactgtcctgac
atgctggtactggcccttctgcagatcagtccgacgtggaacaccttgaagcaggaactc
atctcgacactaatgccaatcttcttggggaaccacccaaactctgccattgttctacat
tacgcctggcactgcccgggcctctccagcacaatccgtaccctcatcatgcactccatg
gctgagtggtatatgagaggagagccacacgaccagacacgattgggacgaattctcgat
gttgctcaggacttgaaggctctgtccatgcttctgaatgcatctccttttgcctttgtg
attgatttggcctgcctggcctccagacgggaatacctcaagctagacaagtggctctct
gacaagatcagagaacatggtgagccgttcatccaggcatgtgcaaacttcctgaagcgt
cgctgtcctcagcttgttgggggcatggccaaggaagacccgacccctcagtccaagagt
cagcagctgcccatggagactatagccaccatggtgtcctgcctgcacacatgtgccaac
actggtcaagtccagattgagttatcggatgctattcggaccatggtgaataatgccaac
cagattttaaacaaagttcgtcccgctcctcccggcacagtaggccctaaatctctgaac
ccagggttgcctcaagccttaccattgcccacaacgcctgttgctgagtccaagccccct
gaccccatgttacagcaatggtccacgtggcaatctgacaaaaagaagatggacgggcct
ggtatcttagggccagtggggctgggtacaagcagcagcgtctcctcctctttcccccag
ggcctaatgaacctgaacccaggacctccatcacctcccaagggctttcagggcctcccc
tcacagactggacatgtcttcaacgctatgcactccatcaccacacagctgcaaaatctt
ggtatgcagtccacaatgcctacctcgatgccctctgtcatgcagggaccccgtagcaca
gtaacttctcttggagcgctcagcgtacagacagcattgaagaacccagcaaacactggg
ccttctggtcgacccagaacaactggcaatggtggggacatgtcaaactttttcccagaa
atgaatcaacagttcagcaaggaagtggaagatgaggccaactcctacttccagcgaatc
tacaaccatattccacacccaaccatgtctacagatgaggtgcttgacatgctcaaaaga
ttcaaggactcctcaaacaagaaagaaagggatgtgtacttctgtatgttgagaagcctg
ttggaggagtaccgtttctttccccagtatccagaaaaagaactccataccacagcagta
ttgtttggtggaatcatagagcagggattagtcacgtatatggccctgggaattgctctc
cgctatgttcttgaagctttgaggaaaccatcgggctcaaggatgtattttttcggtatt
gcagctctggacagattcaaatccagattaaaggattaccctcagtactgcactcacctg
gcctccataccacacttcaatcagtttccacaacatctcattgaatatgtggagtatggt
gcccgctcccaggagcccccacaccacccccagggggcaatcaccacccgcagcctcacc
ccaaccgttggtagccttacacctgcgctctcagggctaggcatgcctcccctaacaccc
actccaaccagcgctggcacgcccatggatggtctgactacaggcacggcgacgcccact
ccagccacaccctccaccccagctgaggccacatctgcctcccctgctgcaccagcaaag
tctgctatgccgaaaccatccattgcaaatgcaactaacatcgacacactactggcaggt
caaggcaaagaagagatctctgttccccctgaatccttacaggacaaggtcttcttcatc
ttcaataacctctccctggcaaacatgagccaaaagtctgaggaactgaaggagtacatc
acagaggagtttatgccatgggtgtcccagtatctggtgatgaagagagccagcatagag
cccaacttccacaccctctacgccaacttcatagatgcactcaacatgccaaacatctcc
acaaacgtcacaaaggagacgttcagaaacatcaaggttctgttgagaagcgacaaaggt
gtggctaacttttctgacagagctttgctgaaaaatctgggtcactggctgggtatgctg
accctagccaaaaacaagcctattctgcaaatagatatagacctgaaagcactgctgtac
gaagcatatcacaaaggagctcaggagttgctctatgtggtgccgttcacagccaaagta
ctggagtcctgtgccaagagcaaggtgttcaaacctcccaacccgtggactatggctatc
atgaatgtgctatccgaactacatcaggaacaaaacctcaaactgaacctcaagttcgag
attgaagtcctgtgcaagacacttggtattgacatcaatgatctgaagcctgggaattac
ctgcgtgaccctcacagattggccgttcttgaaccgcagctctctggagttaccaagatt
ctgagtccccagcctgaccttgaccccgtggtgtccatgagcacgcccccagctgtcccg
gtgacggtgggtgggtcggcttctacctccaccccctctgtcagtctgccacctcagcca
cagtttgacttcaacgacatcgtcacctcgtctctgtcaggactcgctcctcatatcatt
gtcagcgaccaccccctgtggcaagccaatccccaactgaaactaagtgtgaaagccgct
gtagaaagatctgtccaagagttactcccccctgttgtagagagagccatcaaaattgca
ttgaacacttgtgaacagatcgtgaaaaaggactttgccctggacccagaagagaatcgt
atgcgtgccgcagctcaccacatggtgaggaacatgacagctgggcttgcacttatcacc
tgtagggaaccgctttgtacctgtatcaacaacaacctgaagaccaccttcacctcaatt
ctgcgaggtttgacccagcctcagaaggagatggtagagcaggcagcacagatggtgggc
caggagaatgtggaactggcatgtgcatttatccagaagacagctgtggagagggccatt
ccagaaatggataagagactggcaaccgagattgacctgaggaagcatgcgcgtaatgag
ggacgtcgttactgcgatcctgtggtgctgacctatcaggcagagaggatgcctgagcaa
atacgactcaaggttggaggtgtgactccccagcagattgccgtgtatgaggagtttgcc
cggaacataccaggattcttacctacagtgacacacaccagtctgccctcgggaattgcc
agaccaatgcctgtcagagaccagcagtcatttgccacagatgaaatctcacagatgtat
gacaagatcgcttcagaaatcaagcagcatgttcagatggtagcccttcccccaggcaac
tcccactttgtacagttgcacagtctgatggaggcagtactgctggccaggagctcacac
gagatcgtgtctgctctggcccttctgcagaaggctgttgaggggttgctggatcatttc
acagcgatgcctaacgacaatgagctgatgctaaggttcagagactgtcacctgctggtg
ctgagaggtcttcaggatacccgagcatatggcccacaatggacaaacaaacaggtcacc
aggtgtctgattgaaagccgagatgaccggaagtacaacgtagaggccatggactgtttg
atcagagcgcactttgtcaacatgccgcaatatgattcacacctggcatcgctgatggag
aatgggctgaactacatggctgtggcatttgcaatgcaacttgtccagaggtactgtgtg
gatgacaaacataacagtcaaatcagtgagggggactttttcaatacgattgagacgtta
gctagaatcgcttcacactcaagacaggcacctgaagggttaagtgctctgttggagaca
attcgacagaataatgatggcgggctgttagatcgcaccccgaaccagggaggtcccacc
atcatgatgcagactgggatatctcaggcacgtgagtttgatgatcccccaggcctgcat
gagaagacagagtacctgttgcgtgaatgggtcaacatgtaccactcacctgcagccggc
agggacagcaccaaggccttctctgcttttgtgggtcagatgcaccagcagggtatcctg
aagacagatgatctcatcacacggtttttccgtctctgtacagagatgtgtgttgatttg
tgctacagagctttaggcgaacaaagccaaaacccgactctagtccgagccaagtgcttc
cacaccctggatgcctttgttcgtctgatcgccttactggtcaagtactcaggagacaac
agcaacacagtcaccaagatcaatcttctaaacaaggttttgggtatagtggctggagta
ctctatcaggaccacgaggttcggcagagtgatttccagcagctcccctatcaccgcatc
ttcatcatgctcttcattgaactgaatgcaccagagcctatcctggacaccatcaacctt
caagttctcacagcattcagcaatacattccacatcctgcgaccagtgaaagcccctggg
tttgcttatgcctggctggagctggtatctcacagagtcttcattggcaggctgctggcc
ctcacggtccaacagagggcatggggaatgtatgcccagttactggtcgacctgttcaag
ttcctgtctcctttcctgagaaatgctgatctcactaaacctacacagcttctttacaag
ggaacactgcgtgtgttgttggtgttgctccacgatttccctgaattcctctgtgatttc
cactatgctttctgtgatgtgatcccgccaaactgcattcagatgcgtaaccttatcctc
agtgctttccctcgcaacatgcgcctgcccgacccgttcacacccaatctcaaggtggac
atgttacaagacattgcccagcctccgcggatcctcaccagctttgtctccatgatacag
cctccatcattcaggaagaatctggagtcctacctgaagacaaggtcacccgtgacattt
ttgtcagagcttagaggaaacttacaggtggatgagcccgggatgaggtacaacatccct
ctcatcaatgctctggtgttgtacgtgggcacccaggccattgcctacatcaacagcaaa
ggcctgaccccctccatgagcaccatagctcattcctctcacatggacatcttccagaac
atgggggtcagtctagacactgaaggtcgttacctgttcctgaatgccatagccaaccag
ctgaggttccccaatagtcacacccactacttcagctgtacactgctgtacctgtttgct
gaggctaacacagaagccatacaggaacagatcacaagagtgctgttggagcggttaatt
gtgaaccgtccacatccttgggggctgctcatcacattcatcgaactcatcaaaaaccca
gtcttcaaattctggaaccatgactttgtgcactgtgccccagagattgaaaagctgttt
gagtccgtggctaggtcatgcatgcccaagcagacgcagagtgttcgagagcaagaaaca
gccgaaatacactga
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integrated database retrieval system
