Liolophura japonica (common chiton): 135478989
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Entry
135478989 CDS
T09976
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ljp
Liolophura japonica (common chiton)
Pathway
ljp03020
RNA polymerase
ljp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ljp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135478989
09124 Replication and repair
03420 Nucleotide excision repair
135478989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ljp03021
]
135478989
03400 DNA repair and recombination proteins [BR:
ljp03400
]
135478989
Enzymes [BR:
ljp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135478989
Transcription machinery [BR:
ljp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135478989
DNA repair and recombination proteins [BR:
ljp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135478989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
EutB
Motif
Other DBs
NCBI-GeneID:
135478989
NCBI-ProteinID:
XP_064614759
LinkDB
All DBs
Position
12:12270213..12290640
Genome browser
AA seq
1950 aa
AA seq
DB search
MAYTGDSSAPLMTVKRVQFGILSPDEIRRMSVTDGGIKYSETTEGGRPKLGGLMDPRQGV
VDRLSRCQTCAGNMSECPGHFGHIEVAKPVFHVGFLTKTVKVLRCVCFFCSKLLVDPSSP
KIKDIVSKSKGHPRKRLAHVYDLCKSKRMCEGGDEMDTKLGESTEENAEAKKGHGGCGRF
QPQIRKVGLDLTAEWKHVNEDSQERKISLTADRVLEIFKRISDEDCIIIGMDPRFSRPDW
MIVTVFPVPPLAVRPAVVMHGSARNQDDLTHKLADIVKANNQLRRNEQNGAAAHIISEDT
KMLQYHVATLVDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVI
TPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDRLHDLVRRGANQYPGAKYIIRDNGERV
DLRFHPKASDLHLQIGYKVERHMQNGDNIIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLS
VTTPYNADFDGDEMNLHLPQSLETKAEIWELAAVPRMIITPQANRPVMGIVQDTLCAVRK
MTKRDVFLTRAEMMNLLMFLPIWDGRMPKPAILKPRPLWTGKQLFSLIIPGRVNLIRTHS
THPDEEDRGPYKWISPGDTKVLIEDGTLISGILCKKTLGASTGGLVHITFLELGFEQAGE
LYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYVDIQDTIKKAKVDVIEVIEKAHNDELEP
TPGNTLRQTFENQVNRILNDARDKTGSKAQKSLSEFNNFKSMVVAGSKGSKINISQVIAC
VGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGL
IDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQIEQLIQLRYGEDGLDGTAVEFQEMP
SLKPSDNAFERRFKFDTTNERELKRWLAEDVIKDLAGDATVLAEVEREWEQLKEDREILR
QVFPRGDSKVVLPCNLKRLIWNAQKIFRLDSRKPTDLHPLKVIEGVRDLCRRLIIVAGED
RLSKQANENATLLMKCLVRSTLCAKRVAEEHRLSHEAFEWLLGEVESRFHQSQVHPGEMV
GALGAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLTGAS
ARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEWVNVYYEMPDFDVSRI
SSWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDEG
KFQDTEEEMADKMEDDVFLRCIEANILTDMTLQGIEQIAKVYMHLPTTDDKKRIVITDDG
QFKAIAEWILETDGTSLMKVISEKDVDPVRSTSNDIVEIFSALGIEAVRKSIEKEMNHVI
SFDGSYVNYRHLALLCDAMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAASHA
ESDPMKGVSENIMLGQLARIGTGSFDLMLDAEKCKYGMEIPTNVGGMMGPGTGMFFASGA
SPTSGMSPQMTPWSTGATPGYGAWSPGVGSGMTPGAAGFSPAPSESGYSPGYSPAWSPQP
GSPGSPSSPYIPSPIAGAMSPSYSPASPSYVPSSPAMTPQSPSYSPTSPSYSPTSPGYSP
TSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNYTPS
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPKYSPTSPNY
SPTSPSYSPSSPQYSPSSPKYSPTSPNYSPTSPSYSPSSPKYSPTSPTYTPTSPKYSPSS
PEYSPSSPQYSPSSPQYSPASPTYSPSSPKYSPTSPTYSPSSPKYSPTSPTYSPTSPKYS
PTSPTYTPTTPKYSPTSPAYSGGDDDSDKE
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacacgggggattcaagtgcaccgttgatgaccgtaaaacgggtccagtttggt
atcctgagtccagatgaaatacgtcgtatgtctgttacggatggcggaattaaatattct
gagacgacagaagggggccgccccaaattgggaggtcttatggatccacggcagggtgtt
gttgacagactgtctcggtgtcagacatgtgcagggaacatgtcagaatgccctggtcac
ttcggtcacattgaggtggccaagcctgttttccatgttggatttcttacaaagacagtg
aaagtacttcgatgtgtgtgtttcttttgctccaagctcctggttgatccaagcagtcca
aaaatcaaagacattgtgtcgaaatcaaagggtcatccccgaaaacgtcttgcccatgtg
tatgacttgtgtaagagtaagcgcatgtgtgaagggggtgacgaaatggacacaaagcta
ggcgagtccactgaggaaaatgcagaggcgaaaaagggacatggcggctgtggtagattc
caaccacagatccgtaaagtgggtttagatttaacagctgagtggaaacatgtcaacgaa
gactcacaggagaggaaaatatcactgacggctgaccgtgtgctggaaatttttaagaga
atctctgatgaggactgcattatcattggaatggacccacgtttctcgcgacctgattgg
atgattgttactgtgttccccgttccaccactggcagtccgaccagctgtagtcatgcat
ggctctgcacggaatcaggatgatttaactcacaaactggcagacattgtgaaagccaac
aatcagttgagacgaaatgaacagaacggagctgcagcacacattatatctgaagacaca
aagatgcttcagtaccatgtggccaccttggtggacaacgagttaccaggactaccaaag
gctgttcaaaagtcagggagaccgctcaagtctgtgaagcagaggttgaaaggtaaagag
ggccgtgtgcgaggcaatttgatgggtaaacgtgtggatttttctgcacgcacagtcatc
acacccgaccctaatttgaggattgaccaagtgggcgtaccaaggtccattgcacagaac
atgacctttccagagatcgtcacacccttcaacattgacagattgcatgatttggtcaga
aggggagctaatcagtacccaggtgcaaagtacatcatccgtgacaatggagagagagta
gacttgagatttcaccccaaagccagtgatctccatcttcagatcggctataaggttgaa
cggcacatgcagaacggagacaacatcatcttcaaccgtcagccaactctccacaaaatg
agtatgatgtgtcacagagtgaaggtgctaccctggtctacattccgtctgaacctcagt
gtcaccaccccatacaatgctgattttgacggcgatgagatgaacctgcatctgccccag
tccctggagacaaaggcagagatctgggagctggctgctgtccccaggatgattatcacc
cctcaagccaacagacctgtcatgggtatcgtgcaggacacgctctgtgctgtgcgcaaa
atgaccaagagggatgtcttccttacaagggctgaaatgatgaacctgttgatgtttctg
ccgatctgggatggccgcatgcccaaacctgccatcttaaaacctcggccgctgtggaca
ggtaaacaactgttctcactcatcatacctggtcgcgtaaacctgatccgcacccacagt
acccaccctgatgaggaggatcgcgggccgtacaagtggatctctccaggagacacaaag
gtgttaatagaggacggcaccctcatcagtggtatcctgtgtaagaagactctgggagcc
tctacaggaggtctcgtccatatcacatttctggagctggggtttgaacaggctggagaa
ctctacggtaacattcagactgtcgttaacaactggcttctcctagagggtcacagcatt
gggattggagacaccatcgctgatcctcagacctacgttgatatacaggacacaatcaag
aaggctaaggtggacgtgatagaggtgattgaaaaggcccataatgatgagctggagccg
acacctggtaacacactcagacagacctttgagaaccaggtcaatcgtattctcaatgat
gctcgtgacaagactgggagtaaagctcagaagtccttgtcagagttcaacaacttcaaa
tctatggtagtggcaggttctaaggggtcaaaaattaacatctcacaggtcattgcctgt
gtaggccagcagaacgtggagggtaagagaatcccctttggcttccggcatcgaactctg
ccacatttcatcaaggatgattatggtcctgagtccaggggctttgtggagaactcgtac
ctcgctggtttgacaccgtccgagttttacttccacgctatgggaggcagagagggtctg
attgatacagccgtcaaaactgctgagacaggttacatccagcgtcgtttgatcaaggct
atggagagtgtgatggtgaaatatgacggaacagtgaggaaccaaattgaacaactgatt
cagctacgatatggggaggacggactggatggaacagccgtggagtttcaggaaatgccc
agtctgaagccgtcagataacgcctttgaaaggaggttcaaatttgacaccacaaatgaa
agagagctgaagcgttggttggcagaggatgtgatcaaggacctggctggtgatgcgacg
gtgttagctgaggtggagagggagtgggagcagctgaaggaagatcgtgagatcctcaga
caggtgttccctcggggtgacagtaaggttgtcttgccctgtaacttaaagaggttgatc
tggaatgcacagaaaattttcagattggattctaggaaaccaacagaccttcatccgtta
aaggtcatcgaaggtgtgcgagacctgtgccgacgtctcatcattgtggctggcgaggac
agactaagtaaacaggccaatgaaaatgccaccctgctcatgaagtgcctggttcgctcc
accctctgtgctaaacgggtggctgaggaacacaggctgtctcacgaggcatttgaatgg
ctgctgggggaagtggagagtagatttcatcagtcacaggtacatccaggtgagatggtg
ggtgcattgggtgctcagtcgcttggagagcccgccacacagatgacactgaacactttc
cactatgctggtgtgtctgctaaaaatgtcactctgggtgttccacgtctgaaggagatc
atcaatatctccaagaagccaaagaccccatccctaactgtatttttgactggagcttct
gccagggatgccgagaaagctaaggatgtattgtgccgcctggagcacacgacattgaga
aaggtaacagccaacaccgctatctactacgaccctgaccctcagaatacagtgatcgct
gaagaccaagaatgggtgaatgtctactatgagatgcctgactttgatgtctccaggatt
tcgtcttggttactaagaatagaactggatcgcaagcgtatgacagacaagaagctcacc
atggaacagatctctgagaaaatcacagcaggttttggcgatgacctaaactgcattttc
aatgatgacaatgctgaaaaactggtgctaagaatccgaattatgaattctgatgagggc
aagtttcaagatactgaagaagaaatggcagataagatggaagatgatgtattcttgaga
tgtatcgaggccaacatcctaacagacatgacactacaggggattgaacagattgccaag
gtgtacatgcatttgccaaccacagacgacaaaaagcgtattgtgatcacagacgatggt
cagtttaaggccatcgcagaatggattctggaaacggatggaaccagcctgatgaaagtt
atcagtgagaaggatgtggaccctgtcagatcaacctccaatgatatcgtggaaatcttc
tccgcactgggaattgaagccgtccgcaagtccatagagaaagagatgaatcacgtcatc
tcttttgatggctcctatgtcaactaccgtcacttagccttgctttgcgacgccatgaca
gccaagggtcatttgatggccatcacacgtcacggtatcaatagacaggaaacaggagct
ctggccaggtgttcctttgaggaaacggtggacattttgatggaggcagcatcccatgca
gaatctgatccaatgaagggtgtatcagaaaacatcatgttaggccagctggcccgaatc
gggactgggtcatttgacctgatgctggatgcagagaagtgcaaatacggcatggagatt
cccacaaatgtgggcggcatgatgggaccaggaactggcatgttcttcgcctctggggcc
agcccaaccagtgggatgtcgccacagatgacgccgtggtccacaggcgccacaccaggc
tatggggcatggtcaccaggtgtgggcagtggaatgaccccaggggcagctgggttctcc
cctgcccccagcgagagtgggtacagccctggttactcaccggcatggtcacctcagcct
ggctctcctggctcaccatcaagtccatatattccaagccccattgccggcgcaatgagt
ccaagctattcaccagcatcaccttcatatgttccaagttcaccagcgatgacgccacag
agtccaagttactctcctaccagcccatcatactcccctacaagccctgggtactcaccg
acttcccccaactatagtccgacgtctccatcttactctcctaccagcccctcctacagc
cctacatcaccttcatacagcccaaccagcccctcttactctcctaccagcccgtcttac
tccccaacaagcccaagctactcccctacatctccatcctattctccaacaagcccctct
tacagccccacatctccatcatacagccctacaagtccatcttactctccaactagtcct
tcttactctccaaccagcccctcctactccccaacaagtccgtcatactcccctaccagc
ccaagctacagcccaaccagtcctagctactctccaagctcccctaactacactccatca
tccccatcgtattctccaaccagcccatcctacagccctacaagtccatcttacagtcca
actagtccgagctacagccccacatcccctagctactccccaaccagccctagctacagt
cctagtagccccagctactcaccaagtagccccaagtacagccctacgagcccaaactac
tctccaaccagtccttcttactctccaagctcaccacagtactcgcccagttcaccgaag
tacagtcctaccagccccaactactctccaaccagcccatcctactcacccagtagtcct
aagtactccccaacttctcccacgtacacgcctacatcacccaagtacagccctagctcc
cctgagtattccccatcttcccctcagtactctcccagctctccccagtactcaccagca
tctcccacatactctccgtctagtccaaagtactctcccacaagcccaacatactcccca
tccagcccaaaatactcccccacaagccctacatacagtcccaccagccccaagtattct
cctaccagcccaacatacacgcctacaacaccaaagtactcccctactagcccagcttac
tctggaggcgatgatgacagtgataaagaataa
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integrated database retrieval system
