Lepidochelys kempii (Atlantic ridley): 140895770
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Entry
140895770 CDS
T11378
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
lkp Lepidochelys kempii (Atlantic ridley)
Pathway
lkp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lkp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140895770 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lkp03041
]
140895770 (SF3B1)
03036 Chromosome and associated proteins [BR:
lkp03036
]
140895770 (SF3B1)
Spliceosome [BR:
lkp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140895770 (SF3B1)
Complex B
140895770 (SF3B1)
Complex C
U2 SnRNP specific factors
140895770 (SF3B1)
Chromosome and associated proteins [BR:
lkp03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
140895770 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
140895770
NCBI-ProteinID:
XP_073162389
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Position
11:complement(56831438..56871553)
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AA seq
1301 aa
AA seq
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MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSTTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGTSSQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSVGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaagga
aaaaaggctgcccttgatgaagctcagggagtaggccttgattccacaggatactatgat
caagagatttatggtggcagtgacagcaggtttgctggatatgtgacttctattgcagca
actgaattagaagatgatgatgatgactactccactacaagtttgcttggtcagaagaag
ccagggtaccatgctccagtggcattacttaatgacataccacagtcaactgaacagtat
gatccctttgctgaacatcgtccacagaagattgcagatcgagaagatgaatacaaaaag
cacaggcggatgatgatcatttctcctgagcgccttgatccttttgcagatggagggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagcagaaaaagctaaagctggggaactt
aaagtcgtcaatggcacctcctcccagccaccttcaaaacgcaaacggcgttgggatcaa
acagctgaccagactcctggtactactcctaaaaaactatccagttgggatcaagcagag
acccctggacatactccttctttgaggtgggatgaaactcctggccgtgcaaagggtagt
gagactcctggagcaaccccaggctcaaaaatatgggatcctactcccagtcatacacca
gcaggagctgcaacccctggacgggatacacctggtcatgcaactccaggccatggaggt
gcaacttccagtgcacgtaaaaatcgatgggatgagacccccaaaacagaaagagataca
ccgggacatggcagtggatgggctgagactcctcgtacagatcgaggtggtgattcagtt
ggtgaaaccccaactcctggagcaagtaaaagaaagtcacgttgggatgaaacacctgct
agccaaatgggtggtagtactcccgttttgacacctggcaaaacaccaattggtacacca
gccatgaacatggcaacccctacaccaggtcatataatgagcatgactcctgaacagcta
caggcatggcgctgggaaagagaaatagatgagagaaaccggccactatctgatgaagaa
ctggatgccatgttcccagagggatataaggttcttccccctccagctggttatgtgcct
attcgtactccagctcgcaaacttacagcaactcccacaccattgggtggtatgactgga
ttccacatgcaaacagaagatcggaccatgaagagtgttaatgaccaaccatctggaaat
cttccattcctaaaaccagatgatattcaatactttgataaactactggttgatgttgat
gaatcaacacttagtccagaagaacagaaagaaagaaaaataatgaaattgctcttgaaa
ataaagaatggtacacctccaatgagaaaagctgctttgcgccagattactgataaagct
cgtgaatttggagcaggtccgctgtttaatcagattctacctctgctgatgtcaccaaca
cttgaagatcaagaacgtcacttgcttgtcaaagttattgacagaatcttgtacaaactg
gatgatttggtccgaccatatgtacacaagattcttgtggtcattgaaccactactgatt
gatgaagactactatgcgagagtggaaggcagagaaattatatcaaacttggctaaggct
gctggtttggctacaatgatctccaccatgcgacctgatattgataacatggatgaatat
gtccgaaatacaacagctcgagcctttgctgttgtcgcctctgctttaggcattccttct
ctgttgcccttcttgaaagctgtatgtaagagcaaaaaatcctggcaagctaggcacact
ggcatcaagattgtacagcaaattgctattcttatgggctgtgctatcttgcctcatctc
agaagtttggttgaaatcattgaacatggtttggtggatgagcagcagaaagtgcgtact
atcagtgctttggctattgctgctttggctgaggcagctactccttatggtattgaatca
tttgactccgttctaaagcccttatggaagggtatacgtcagcacagaggaaagggtctg
gctgcctttttgaaagctattgggtatcttatccctcttatggatgctgagtatgccaac
tactataccagagaagtaatgctaatccttatcagagagttccagtctcctgatgaagaa
atgaaaaaaattgtgttaaaggtggtaaagcagtgttgtggtacagatggcgttgaagca
aactacattaaaacagagattctgccgccatttttcaaacacttttggcagcacagaatg
gcactggacagaagaaattacagacagctggttgatacaacagtggagctggcaaacaaa
gttggagcagcagaaattatttccaggattgtggatgatctgaaagatgaggctgagcag
tacagaaaaatggttatggaaacaattgagaaaataatggggaacctgggtgcagcagac
attgaccataaactagaagaacaacttattgacggtatcctgtatgccttccaggaacag
accacagaggactctgtgatgttgaatggctttggcacagtggttaatgctcttggcaaa
cgagttaaaccgtacttgccccagatctgtggtacagttttatggcgtttgaacaacaaa
tcagccaaagttaggcagcaggctgctgacctgatctcacgtactgcagttgttatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtcctgtatgagtatctgggt
gaggaataccctgaagtattaggcagtatacttggagcacttaaagccattgtgaatgtt
ataggtatgcacaagatgacgccaccaatcaaggacctgctgccaagactcacacctatc
ttgaaaaacagacatgagaaagtacaggagaattgtatcgacctagttggtcgtattgct
gacaggggagcagaatatgtttctgcaagggaatggatgaggatctgctttgaactgctg
gagttgttaaaagctcacaagaaagctatccgacgagccacagtaaatacttttggttat
attgcaaaagctattggaccccatgatgtgctggctacactgctaaataacctgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcacctttcacagtactgcctgctctgatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtattaaaatctctttcttttctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccactacttgaagacgctttaatggacagagaccttgta
cacagacaaacagccagtgctgtggtgcagcatatgtctcttggagtatatggatttggc
tgtgaggattctctgaatcacttgttaaattatgtgtggcccaatgtgtttgagacatct
cctcacgtcattcaggcagttatgggagcactggagggcctaagagttgccattggaccg
tgtagaatgctgcagtattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtgtattggaagatttataattcaatctatattggctcacaggatgccctgatagcacat
tatccaagaatctacaatgatgaaaagaacacctacattcgttatgaacttgattacatc
ttataa
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