Apilactobacillus kunkeei: APS55_04830
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Entry
APS55_04830 CDS
T04112
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lku
Apilactobacillus kunkeei
Pathway
lku03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lku00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APS55_04830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lku03021
]
APS55_04830
03400 DNA repair and recombination proteins [BR:
lku03400
]
APS55_04830
Enzymes [BR:
lku01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APS55_04830
Transcription machinery [BR:
lku03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APS55_04830
DNA repair and recombination proteins [BR:
lku03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APS55_04830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ALJ31588
LinkDB
All DBs
Position
1067607..1071215
Genome browser
AA seq
1202 aa
AA seq
DB search
MKNLAGHLVKYGKHRIRRSYSQIKEVLDLPNLIEIQTDSYKWFLDEGLREMFNSIMPIDD
FQGKLSLEFVDYQLLEPKYTVNEARDHEANYSAPLHITLKLTNHETGEIKTQDVFFGDFP
LMTDQGTFIINGAERVIVSQLVRSPGVFFHKEEDKNGRISYGTTVIPNRGAWMEFETDAK
NLSYVRIDRTRKLPITELVRALGFGSDDEITQILGSNDSLSLTLEKDVHKDTEDSRVEEA
LKDIYERLRPGEPKTADSSRSLLTTRFFDPKRYDMAPVGRYKTNNKLSLKTRLLGLTLAE
TLADPDTGEIIAKKGTVIDKNVMKELAPYLDREDFKAYTFNPSEQSVVPEPMTVQIIKVQ
SEKDPDHVVNMIGNDNISLDYHHITPADIISAINYFFNLQEGIGEPDDIDHLGNRRIRSV
GELLQNQFRIGLARMERVVRERMSIQDTTTVTPQQLINIRPVVASIKEFFGSSQLSQFMD
QTNPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRICPIETPEGPNIGLINSLS
SYSKVNKYGFVETPYRRVSWDTHKVTDKIDYLSADEEDNFVVAQANSPLNEDGSFKNDVV
MARYKSNNIETKIENVDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLVN
PHAPLVGTGIEYKAAHDSGVALICKHPGTVEYVDADEVRVRREDGSLDTYKLMKFQRSNG
GKNYNQRPIVRVNDKVDADEILADGPSMENGELALGQNPVVAFMTWQGYNFEDAIGISER
LVREDVYTSIHIEEYESETRDTKLGPEEMTREIPNVGEDALRNLDEEGTIRIGAEVHDGD
ILVGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIVQDVKVFTRENGDE
LAPGVNKMVRVYIAQKRKIQVGDKMSGRHGNKGTVSIVIPEEDMPYLPDGTPIDILLSPM
GVPSRMNIGQVLELHLGMAARKLGIHVSTPVFDGARDSDIWDAVKEAGMASDGKSIVYDG
RTGEPFDKRVAVGVMHYLKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQALGL
DMKVLNEDNQEIELRDLDSEEDDGVVNVDALSKLAEKQKKEQEDKDEEKSEQDDKANTNF
KE
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaacttggcaggacatttagttaaatatggtaaacaccgtattcgtagaagttac
tctcaaatcaaggaagttcttgatttacctaatttaattgaaattcaaaccgattcatac
aagtggttcttagatgaaggtttgcgtgaaatgtttaacagcattatgccaattgatgat
ttccaaggaaaactatccttagaattcgttgattaccaattattagaacctaagtacact
gttaatgaagcaagagatcatgaggctaactactcagctccacttcatatcacattgaaa
ttgaccaatcatgaaactggtgaaattaagacccaagatgtattctttggcgatttccca
ttgatgactgatcaaggtactttcattattaacggggcagaacgtgtaattgtttcacaa
ttagttcgttctcctggtgtattcttccacaaagaagaagataaaaatggacgtatcagc
tatggtactactgtaattcctaaccgtggtgcatggatggaattcgaaactgacgcaaag
aacttatcatacgttcgtattgatagaactagaaagctaccaattactgaactagttcgt
gcattaggtttcggttcagatgacgaaattactcaaattttgggtagcaatgatagtctt
tcattgactcttgaaaaagatgtccacaaagacacagaagattcacgtgttgaagaagca
ttaaaggacatttacgaacgtctacgtccgggtgaacctaagactgctgattcatctcgt
agcctattgactactcgtttcttcgatccaaaacgttacgacatggctcctgttggtaga
tacaagactaacaacaagttaagcctaaagactcgtttactaggattaacccttgctgaa
actttagctgatccagatactggtgaaattattgctaagaagggtactgtaattgataag
aatgtcatgaaggaattagctccatacttggaccgcgaagacttcaaggcatacactttc
aacccttcagaacaatcagttgttccagaaccaatgactgtacaaatcatcaaagtacaa
tcagaaaaagacccagatcatgttgttaacatgattggaaacgacaacatctcattggat
taccatcacatcactccagcagatatcatttctgctatcaactacttcttcaacttgcaa
gaaggaattggtgaacctgatgatattgaccatttaggtaaccgtcgtatccgttctgtt
ggtgaattactacaaaaccaattcagaattggtctagcaagaatggaacgtgtagtaaga
gaacgtatgtcaattcaagacactactactgttactccacaacaattaatcaacattcgt
cctgtagtagcttcaattaaggaattctttggttcatcacaattgtcacaattcatggac
caaactaacccattgggtgaattaactcataaacgtcgtctatctgcattgggacctggt
ggtttgaccagagaccgtgccggatacgaagttcgtgacgttcactacactcactatggt
cgtatttgtccaattgaaactcctgaaggtcctaacattggtttgattaactcactttca
agttattctaaggttaacaagtacggtttcgtggaaacaccttaccgtcgtgtatcatgg
gatactcacaaagtaactgataagattgattacttatcagctgacgaagaagataacttc
gtagttgctcaagctaactctccattaaatgaagacggatcattcaagaacgatgttgtt
atggctagatacaagtcaaataatattgaaactaagattgaaaacgttgactacatggac
gtttctcctaagcaagtagtttcagttgccactgcatgtattcctttcttggaaaacgat
gactccaaccgtgccttgatgggtgccaacatgcaacgtcaagctgttcctttggttaat
ccacatgcaccactagttggtactggtatcgaatacaaggcagctcatgactctggtgtt
gctttaatctgtaaacacccaggtactgttgaatatgttgacgctgacgaagtacgtgtt
agaagagaagacggttcattagatacttacaagctaatgaagttccaacgttcaaacggt
ggtaagaactacaaccaacgtccaattgttcgtgtaaatgacaaggttgacgctgatgaa
attctagctgacggtccttcaatggaaaacggagaacttgctttaggtcaaaacccagtt
gttgcgttcatgacttggcaaggttacaacttcgaagatgccattggtatttcagaaaga
ttagttcgtgaagatgtatacacttcaattcatattgaagaatacgaatcagaaactaga
gataccaaacttggacctgaagaaatgactagagaaattcctaacgttggggaagacgct
ttaagaaaccttgacgaagaaggaactatcagaattggtgctgaagtacatgatggtgac
atcttagttggtaaggttactcctaagggtgtaacagaattatcagctgaagaacgttta
ctacatgctatcttcggtgaaaagtctagagaagtccgtgatacttcactacgtgtacct
cacggtggtggcggtatcgttcaagacgttaaggtcttcactagagaaaatggtgatgaa
ttagcaccaggtgtaaacaagatggttcgagtttacattgctcaaaaacgtaagatccaa
gtaggggacaagatgtctggtcgtcacggtaacaagggtactgtttccattgttattcct
gaagaagatatgccttacttaccagatggtactccaattgatattctattgagtcccatg
ggtgtgccttcacgtatgaacattggacaagttcttgaattacacttaggtatggctgct
agaaaactaggtatccacgtaagtactccggtattcgatggtgctcgtgattcagatatc
tgggacgctgttaaggaagctggtatggcttcagacggtaagtcaattgtttacgatggt
agaaccggtgaaccatttgataaacgtgttgcagttggtgtaatgcactacttgaaactt
gctcacatggttgacgataagatccatgctcgttcaattggaccttactcactagttact
caacaaccacttggtggtaaagcacaatttggtggacaacgttttggtgaaatggaagtt
tgggccctagaagcttatggtgccgcatacacactacaagaaatcttgacttacaagtca
gatgacgttgttggtcgtgttaagacatacgaagctattgttaagggtgaaccaattcct
aagccaggtgttcctgaatcattccgtgttcttgtaaaagaacttcaagctcttggatta
gacatgaaggttcttaacgaagacaaccaagaaatcgaacttcgtgacttagacagcgaa
gaagacgacggtgttgttaacgttgatgctttaagcaaactagctgaaaagcaaaagaaa
gaacaagaagacaaagatgaagaaaagtctgaacaagacgacaaagcaaacaccaacttt
aaggaataa
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