Lacipirellula limnantheis: I41_54680
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Entry
I41_54680 CDS
T09857
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
llh
Lacipirellula limnantheis
Pathway
llh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I41_54680 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llh03021
]
I41_54680 (rpoC)
03400 DNA repair and recombination proteins [BR:
llh03400
]
I41_54680 (rpoC)
Enzymes [BR:
llh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I41_54680 (rpoC)
Transcription machinery [BR:
llh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I41_54680 (rpoC)
DNA repair and recombination proteins [BR:
llh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I41_54680 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QDT76223
UniProt:
A0A517U6J3
LinkDB
All DBs
Position
complement(6652042..6656442)
Genome browser
AA seq
1466 aa
AA seq
DB search
MSILEGANYDRVNDYGSVKISLARPHDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIF
GPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPIVHIWFFKAMPS
RLGSLLAMKTTSLEKVIYFQDYVVIDPKETALKPQQLLTEEEYRAAREQYGENGFEADMG
AEAIRKLLQNLDLVKLSEQLRVDLRETGSKQKAKDLINRLKTVESIRDSDNKPEWMVLDV
IPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQ
SVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPRL
KLHQCGLPKKIALELYQPFIIRRLKELGHADTIKSAKKMLERKDDEVWDILEEVITNHPV
LLNRAPTLHRMGIQAFEPTLVEGNAIQLHPLVCRGFNADFDGDQMAVHLPLSIEAQVEAH
TLMMSTHNIFSPGNGSPIISPSQDIVMGCYYLTMGVPEEKGDGMAFSSFSELHTAYAAGK
VGTHARIKVRLPKDRCMREDFDKKKGFGKRVDTTVGRVLFNEILPKGMPFYNIAMRSSEL
ARVISDCYEILGRRQTIELLDDMNQIGFRQSTLSGLSFATDDLITPDTKGKIIGEADKMV
MKFNKLFQRGVITELERYNSVLDAWTHAREQITSEMMSRLESDFRTGGYVNPIFLMAHSG
ARGGVEQMRQLGGMRGLMAKPSGKIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVVTMEDCGTTQGITKGIIYRGEKVEVNLVDSIRGRVSRANIV
NPITDEVIVHENELITGEIGRKIEQMGLEKIQVRSPMTCDASLGVCRRCYGMDLSTGSMV
EEGMAVGIIAAQSIGEPGTQLTMRTFHIGGTGQHSVEDSDIKAKKGGIAKTARLKMVTND
AGQQVVLSRNGEIALVDEKGREVEKYEVPTGAVLQVKEDEVVKAGQVICEWDPHSIPIIA
ETGGRIRYEDLVEGETMRGEKDPSGKMRFVILEHKGDMHPQLVVEDPADGKILDFYYMPE
RAHIEVDEGQVITPGTLVAKTPREASGTQDITGGLPRVTEIFEARKPKDPAVIAEIDGQV
ELLGEKKRGKRSIIVRSETGIEREHLVSHSKHLRVHAGDHVRAGEALVDGPLVPHDILRI
SGEEAVQQYLTREIQNVYRSQRVEINDKHIEIIVSQMLRKVKIESPGDTDLLPGAVMDKF
DFRSANEAVAKCLKITHRGDSEFAEGSVVPKEVIEQANATIESLGGDVAKGTKPKMATAS
TQLLGITKASVQSGSFISAASFQETTKVLTEAALAGRTDYLVGLKENVILGHLIPAGTGF
KSIHESEVRIQPSALEALASEKERVLERSFPLLESALRAGGDGAGPTTVSDGNGERSAAR
PAAPTGLDALLGGIPGPAGAEDLDDE
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgagcattctagaaggcgcgaactacgaccgcgtgaacgactacggctcggtgaaaatc
agcctggctcgcccgcacgacattcggagctggtcgttcggcgaggtgaagaagccggag
acgatcaactaccgcacctaccgtccggaaaaagacggcttgttctgcgagcgcatcttt
ggcccggagaaggactgggaatgcgcgtgcggcaagtaccgcggcatgaagtacaagggg
atgatctgcgaccgctgcggggtgaaggtcacccatagccgcgttcgtcgcaagcggatg
ggccacatcgagttggccgcgccgatcgtccatatctggtttttcaaggcgatgccgagc
cggctcggcagcctgctggcgatgaagacgaccagcctggagaaggtgatctacttccag
gattacgtggtcatcgatccgaaggaaaccgctctgaagccgcagcaactgctgacggaa
gaagagtaccgcgcggcgcgtgagcagtacggcgagaacggcttcgaagccgacatgggc
gccgaggcgatccgcaagctgctgcagaatctcgacctggtaaagctcagcgagcaactc
cgcgtcgatctgcgcgagacgggctcgaagcaaaaggccaaggacctgatcaatcggctg
aagaccgtcgagtcgatccgcgactccgacaacaagccggagtggatggttctggacgtg
atcccggtgatcccgcccgatctccgtccgctggtgctgctcgacagcggcaacttcgcg
acgagcgatttgaacgacctttaccggcgcattatcaatcgcaacaaccgtctgaagaag
ctggtcgacctcaacgccccggaagtcatcattcgcaacgaaaagcggatgctgcagcaa
tcggtcgacgcgctgttcgacaacaaccgctgcaagcggccggtgctcggcagttcgaac
cgcccgctcaagtcgctcaccgacatgatcaagggcaagcagggtcgcttccgcgagaac
ctgctcggcaagcgcgtcgactattcggctcgctcggtgatcgtcgtcggtccgcggctg
aagctccatcagtgcggtctccctaagaagattgcgctggagctgtaccagcccttcatc
attcgccggctcaaggaactcggccacgccgacacgatcaagtcggcgaagaagatgctg
gagcgcaaggacgacgaggtgtgggatatcctcgaagaggtgatcaccaaccacccggtg
ctcctcaatcgcgccccgacgctccaccgcatgggcattcaggcgtttgagcccacgctg
gtggaaggcaacgccattcagttgcatccgctggtttgtcgcggcttcaacgccgacttc
gacggcgatcagatggcggtccacttgccgctgtcgattgaagcccaggtcgaagcccac
acgttgatgatgtcgacgcacaacatcttcagccccggcaacggctcgccgattatcagc
ccgtcgcaagacatcgtcatgggttgctattacctgacgatgggcgtccccgaagaaaag
ggagacggcatggcgttcagctcgttcagcgagttgcacaccgcctacgccgccggcaag
gtcggcacccacgcccgcatcaaggtgcggctgccgaaggaccgctgcatgcgggaagac
ttcgacaagaagaagggcttcggcaagcgcgtcgacaccaccgtcggccgcgtcttgttc
aacgaaatcctgccgaaggggatgccgttctacaacatcgcgatgcggtcgagcgaattg
gctcgcgtcattagcgactgctacgaaatcctcggccggcgtcagacgatcgagttgctc
gacgacatgaaccagatcggcttccgtcaaagcacgctcagcggtttgtcgttcgctacc
gacgacctgatcacgcctgatacgaagggcaagatcatcggcgaagccgacaagatggtc
atgaagttcaacaagctgttccagcgcggcgtgatcaccgaactggaacggtacaactcg
gtgctcgacgcctggacgcatgctcgcgaacagatcacgtccgaaatgatgtcgcgactt
gaaagcgacttccgcaccggcggctacgtcaacccgatcttcctgatggcccactccggc
gcccgcggcggcgtcgaacagatgcggcagctcggcggtatgcgtggtctgatggctaag
ccgtcaggcaagattatcgagacgccgatcaaggcgaacttccgcgaaggcctcacggtg
ctcgagtacttctccagcacccacggcgcccgcaagggcttggctgacacggctctgaag
acggccgactcagggtacctgacccgcaaactggccgacgtcgctcagaacgtcgtcgtc
acgatggaagactgcggcacgacccaaggcattaccaagggcatcatctaccgcggcgaa
aaggtggaagtgaacctggtcgactcgatccgcggccgcgtcagccgggcgaacatcgtc
aacccgatcaccgacgaagtgattgtgcacgaaaacgagctgatcaccggcgagattggt
cgcaagatcgagcagatgggcctggagaagattcaggttcgcagcccgatgacctgcgac
gcgtcgcttggcgtttgccgccgctgctacggcatggacctttcgaccggttcgatggtt
gaagaagggatggccgtcggcatcatcgcggctcagtcgatcggcgagcccggcacgcag
ctgacgatgcggacgttccacatcggcggcacgggccagcactcggtcgaagatagcgac
atcaaggccaagaaggggggcatcgcgaagaccgcccgcctgaagatggtgaccaacgac
gccggccagcaggttgtgctttcgcgcaacggcgaaattgccctggtcgacgagaaggga
cgcgaggtcgagaagtacgaagtaccgaccggcgccgtgctgcaagtgaaggaagacgaa
gtcgtcaaagcgggccaagtgatctgcgaatgggatccgcacagcattcccatcatcgcc
gagacgggcggccggattcgctacgaagatctcgtcgagggcgagacgatgcgcggcgag
aaggaccccagcggcaagatgcgcttcgtcatcctggagcacaagggcgatatgcatccg
cagctcgtcgttgaagatccggccgacggcaagatcctcgacttctattacatgcctgaa
cgggcccatattgaagtcgacgaaggtcaggtcattactcccggtacgctcgtggcgaag
acgccgcgcgaagcctccggcacgcaggacatcaccggcggtctgccgcgggtgaccgaa
atcttcgaagcacgcaagcccaaggatccggcggtcatcgccgagatcgacggccaggtc
gagctgttgggcgagaagaagcgcggcaagcgttcaatcatcgtccgcagtgaaacgggc
atcgagcgcgagcacttggtgtcgcactcgaagcacttgcgcgtccacgccggcgaccac
gtccgtgcgggcgaagcgctcgtcgacgggccgctcgtgccgcatgacatcctgcggatt
tccggcgaagaggccgtgcagcagtatctcactcgcgagattcagaacgtctatcgcagt
cagcgcgtcgaaatcaacgataagcacatcgagatcatcgtgtcgcaaatgctgcgaaag
gtgaagatcgaatcgcccggcgataccgatctgctgccgggcgccgtcatggacaagttc
gacttccgcagcgccaacgaagcggtggcgaagtgcctgaagatcactcaccgcggcgac
agcgagttcgccgagggttcggtggtgccgaaggaagtgatcgagcaggccaacgcgacg
atcgaatcgctgggcggcgacgtcgccaagggaacgaagccgaagatggcgaccgccagc
acccagctcttgggcatcaccaaggcgtcggtgcagtcgggcagtttcatctcggcggcg
agcttccaggaaacgacgaaagtcctcaccgaagcggcgctcgcgggtcgcaccgactac
ctggtcgggttgaaggaaaacgtcatcttggggcacttgattccggccggtactggcttc
aagtcgatccacgaatcggaagtgcggattcagccgtcggccttggaagctctcgcctcc
gagaaggaacgcgtgctggagcgttcgttcccgctgctggaatcggcgctccgcgcgggc
ggggacggggcgggaccgaccacggtttcggacggcaacggcgagcgatcggcggcccgg
ccggcagcgccgaccggtctcgacgcattgctgggcggcattcccggtccggctggcgcc
gaggatttggacgacgagtaa
DBGET
integrated database retrieval system
