Lineus longissimus (bootlace worm): 135486248
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Entry
135486248 CDS
T09977
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like
KO
K18735
protein SMG9
Organism
llon
Lineus longissimus (bootlace worm)
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135486248
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
135486248
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOBP
ABC_tran
MMR_HSR1
NB-ARC
Motif
Other DBs
NCBI-GeneID:
135486248
NCBI-ProteinID:
XP_064624984
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Position
4:complement(25314939..25319823)
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AA seq
470 aa
AA seq
DB search
MSSDPMDRDRNGRRRRRRGRKERDRESESRETTPAPASQPSSMSRTPIILAKPAPERRSS
EETIPVIAKAPEKPIVMVKPREESKMSPVSTQIMSSAMSMESLHATPGYRLQRPVASSSP
TPLVSSESSLQSRLAVPADMQHSIKLVDESLQWCENGMEILLDQTHYYVIGVIGPQGVGK
STIMSLIGGANLDDINKPWPFRPQSREVKEVCGHQTTGIDMYVTGERVILLDAQPVLSAS
VLDYMIHHDKKYPAEYTAAENCHEMQSLQMAAFMYTVCNVVLVVQDWFTDPFLLKFLQTA
EMLKPPTPSSGHESNASQDDTPEYYPNVVFVQNRARRSDFGGGSYNTMQQTLAKVFEKSR
LRYRGSMSMGNLLPGLNQKTVPGDVNVFLLPAFDNTEKWGDPISSLLPEYRGHPGFDFLM
RSFKNQLFSMPRSMLTHTTLTEKNWFHYAARTWEAVKKSQLFSEYNRLLP
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagatccaatggaccgcgacagaaatggcagacgaaggaggagacgtggacga
aaggaaagggaccgtgaaagtgaatcaagagagacaactccagcgccagcatcccagccg
tcgagcatgtccaggactccaattattctagctaagccagcaccagaaaggagatcctct
gaagaaaccattccggtgattgccaaagcaccagagaaacctatcgtcatggtgaaacca
agagaagagagcaaaatgtcgcctgtgagcacccagatcatgtcctcggccatgagcatg
gagtcgctgcatgccactcctggatatcgtctccagagacctgtagcttcatcaagtcca
acaccgctagtgtcatcagagagttctctgcagtcacgccttgccgtgccagctgacatg
cagcacagcatcaaactggtggatgagtctctccagtggtgtgagaatgggatggagatc
ttgttggaccagactcactattatgtgatcggcgtcattggaccacagggagttggaaag
tctaccatcatgtctctcattggcggagcgaacttagatgacatcaacaaaccttggcca
ttccgaccacagagcagagaagtgaaagaagtttgtggtcaccagacgacaggaatcgac
atgtatgtgactggtgagagggtgatcctccttgatgcccaaccagtgctgagtgcctct
gtcctcgactacatgatccaccatgacaagaagtaccctgcagaatacactgcggctgag
aactgccatgaaatgcagtctcttcagatggcggctttcatgtatacagtgtgtaacgtt
gtgctggttgtgcaagactggttcactgatccattccttctcaagtttttacaaacagct
gaaatgttgaaaccaccgactccttctagcggccatgagagtaatgcaagtcaagacgat
acgccggaatattatccaaatgttgtgtttgttcagaaccgagcgaggagatctgatttt
ggtggcgggagttataacacgatgcagcagactctggccaaggtgtttgagaagtcgaga
ttacgctacagagggagcatgtcgatgggtaatctcctgcctgggttgaaccagaagact
gtcccgggggacgttaacgtcttcctcttgccagcgtttgacaatacggaaaaatgggga
gacccgatctccagtctgctgccagaataccgtgggcaccctggctttgacttcttaatg
cgatcgttcaagaatcaactcttctcgatgccaagatctatgctcacgcataccactctg
actgagaagaactggttccattacgctgcaaggacatgggaagcggtcaagaagtcccag
cttttctcggagtataatcgtcttctcccgtga
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