Leucobacter luti: K1X41_15195
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Entry
K1X41_15195 CDS
T08001
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
llut
Leucobacter luti
Pathway
llut03030
DNA replication
llut03410
Base excision repair
llut03420
Nucleotide excision repair
llut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K1X41_15195 (ligA)
03410 Base excision repair
K1X41_15195 (ligA)
03420 Nucleotide excision repair
K1X41_15195 (ligA)
03430 Mismatch repair
K1X41_15195 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llut03032
]
K1X41_15195 (ligA)
03400 DNA repair and recombination proteins [BR:
llut03400
]
K1X41_15195 (ligA)
Enzymes [BR:
llut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K1X41_15195 (ligA)
DNA replication proteins [BR:
llut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K1X41_15195 (ligA)
DNA repair and recombination proteins [BR:
llut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K1X41_15195 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K1X41_15195 (ligA)
MMR (mismatch excision repair)
DNA ligase
K1X41_15195 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K1X41_15195 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
HHH
PTCB-BRCT
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QYM77470
LinkDB
All DBs
Position
3396335..3398665
Genome browser
AA seq
776 aa
AA seq
DB search
MPTDFEAAREEVARLTSEIERLRLSYYSEGASLVSDAEYDEQFHRLEALERAFPELAGQD
SPTREVGAAVVSAGFPEHEHAERLLSLDNVFSLEEFREWAEKTRAASGRAVRWLSELKID
GLAISLAYRNGVLETATTRGDGRVGEDITENVDLIPVIPRTLSGEGIPEFFEARGEVFLR
GEDFEWLNERQHALQAEYVAEQRARGRAVDEIPVRYPEFANARNTAAGSLRQRSDKKTPA
ERELMRERLGRLSLYVHGIGAWAHPDFENQSDAYRLLADWGLPVSPHSRVFDTIDEVTAF
IEDRGAHRHDVEHEIDGIVVKVDELALHAELGETSRAPRWAIAYKYPPEEVHTRLLDIRV
GVGRTGRATPYAVMEPVKVAGSTVRQATLHNQQVVAAKGVLIGDTVVLRKAGDVIPEVLG
AVLELRDGSEVEWRMPAECPECGTALRAMKEGDIDLRCPNARDCPAQVRGRVEHIGSRGA
LDVEVLGEITAAALTQPEVPATPPLETEAGLFELTLEQIVPIEVIVRDAETGAQKIDPDT
GAPVRRAPFQRVTIEYPPEAAALDAAERRRRGFTKNHRVVTPSKDAETFLQELDRAKTKP
LWRLLVSLNIRHVGPVAARALADWFGSLDAIRAATADELAQVDGVGSTIAESLTDWFAVD
WHREIVERWTAAGVQWSTPGHPGPGAAVAEGGVLAGLTIVATGALDGFTRDGAKEAIIQA
GGKAAASVSKKTDFVAAGPGAGSKLAKAEELGIPVLDAAQFAVLVSEGPDALGLES
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
ctgccgacagatttcgaggccgcacgtgaagaagtcgcgcgcctcacctccgagatcgag
cggctgcggctgtcgtattattccgaaggcgcgagcctggtctcggacgcggaatacgat
gagcagttccaccgtttggaggctcttgagcgtgcgttccctgaactcgcagggcaggac
agcccgacacgcgaggtgggcgccgcggttgtatcagcgggctttccggagcatgagcac
gcagagcgtctcctcagcctcgataacgtgttctcgctcgaagagtttcgtgagtgggca
gagaaaacgcgcgccgcgtccgggcgtgcggtgcgctggctctccgagctgaagattgac
ggcctcgcaattagcctcgcctatcgcaacggggtgcttgagaccgccaccacgcgtggc
gatggccgagtcggagaagacatcacagagaacgttgacctgatcccggtgatcccgcgg
acgctctcaggggagggaattcctgagtttttcgaggcgcgtggtgaagtctttttgcgt
ggcgaagatttcgagtggctgaatgaacggcagcatgccctgcaggccgagtatgtcgcg
gaacagcgggcgcgcggccgcgcagtagacgagattcccgtgcgatatccggagtttgcg
aatgcccgcaacacagcggccggaagtctcaggcagcgttctgacaagaagacgccggca
gagcgagagctgatgcgcgagcggctcggccggctttcgctgtatgtgcacgggattggc
gcatgggcgcatcccgacttcgagaatcagtctgatgcgtatcgtctcctggccgattgg
gggctgccagtgtcaccgcactcgcgcgtgttcgacacgatcgacgaggtgaccgcattc
atcgaagatcgtggtgcacaccggcacgacgtggaacacgagattgacggcattgtcgtc
aaggtggatgagctcgcgttgcacgcagaattgggcgagacgagccgtgctccgcgttgg
gcgatcgcgtacaagtatccgcctgaggaagtgcacacgcggttgctggatattcgcgtg
ggcgtgggccgaaccggcagggcaacgccgtacgccgtgatggagccggtgaaggtcgcc
ggatcgaccgtgcggcaggcgacgctgcacaaccagcaggtggttgcagcgaagggcgtg
ctgatcggcgacaccgtcgtgctgcgaaaagccggagacgttattccagaggtgctcggt
gcggtgctcgagttgcgcgatggctccgaggtcgaatggcgtatgccagccgagtgcccc
gagtgcggcaccgcgttgcgtgcgatgaaagagggcgacatcgacctgcgctgcccgaac
gctcgggactgcccagcacaggtgcgtgggcgggtggaacacatcggatcgcgcggtgcc
ctcgatgtcgaggtgctcggtgagattaccgccgcggcactgacacagcccgaggtgcca
gcgacgccgccgctggaaaccgaggccggactgtttgagttgacgcttgagcaaatcgtg
ccgatcgaagtcatcgtgcgcgacgcggagaccggagcgcagaagatcgatcccgacacc
ggggcacccgtgcggcgcgcgccgttccagcgggtcacgattgagtacccgcccgaggct
gctgcattggacgcggcggagcgacggcggcgtggcttcaccaagaaccatcgagtagtg
actccgtcgaaagatgcggaaaccttcttacaagaactcgaccgtgccaagacgaagcca
ctctggcgtctgctggtgtcactgaacatccgccatgtcggccccgtggcggcacgtgcc
ctcgccgactggttcggctcgctcgacgcaatccgggccgcgaccgcagacgagctcgcc
caggtggacggtgtgggaagcacgatcgccgagtcgctcacggattggtttgcggtcgat
tggcatcgcgagatcgttgagcgctggactgctgctggggtgcagtggtcgacgccgggc
caccccggcccgggcgccgcagttgctgagggcggcgtgctcgccggactgacgatcgtc
gccacaggggcgcttgacggcttcacgcgagacggcgcgaaggaagcgatcattcaggct
gggggcaaggccgcggcgagtgtgtcgaagaaaacagactttgtcgcagcgggccccggc
gcgggatcgaaactcgcgaaggctgaagaactcggaattccggtgcttgatgccgctcag
tttgcggtgctggtgagcgaggggcccgacgcactcggactcgagtcgtag
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