Lutra lutra (Eurasian river otter): 125089252
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Entry
125089252 CDS
T08100
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125089252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125089252
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125089252
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125089252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
125089252
NCBI-ProteinID:
XP_047567305
LinkDB
All DBs
Position
17:25970194..26082278
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLGGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacaacatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcgacgctgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggccttgccctcttgaattcttccagctcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttcctgatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacatctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacaaatagacgcttttcttaagacgctgcgcagagattttccccaggaacgctgtccc
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagccaaaaccatgatggagagctccttggctgattttatgcag
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacagatggaattccattacagagtatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagtgatggagcacaggcacacacatggaatgtagaagtc
ttgattgatgttctcaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtttatggc
attcagcggggtctgggtatggaagtgttcccagtagacctcatatatagaccttggaaa
catgcagaaggccagctctccttcattcagcattcccttataaatccagagatcttctgc
tttgctgactatccctgtcatacggttgccactgatattctgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctgctgaggctt
gcagaggtggggcaatatgagcaagtcaaacagctcttcagcttccctattaaacactgt
ccagacatgctggtattggccttactacaaatcaacacctcttggcacaccttgcgccat
gagctcatctctactctgatgccaattttcctcggaaaccatcctaactctgctattatt
ttgcactatgcatggcatgggcagggacagtctccctcaatccgccaacttattatgcat
gcaatggcagaatggtacatgcgaggggagcagtatgatcaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgataagtgg
ctcacagataaaattcgagagcatggagagccttttatccaggcatgtatgactttttta
aagagacggtgcccttctattttgggtggacttgctccagagaaagatcagcccaaaagt
gctcaacttcctccagaaactctggcgacaatgttggcctgtttacaagcttgtgcaggg
agtgtttctcaggagttatcagaaaccatccttaccatggtggccaattgcagtaatgtt
atgaacaaggccagacagcctccacctggagttatgccaaaaggacgccctcctagtgct
agcagcttagatgccatttctcccgttcagattgaccctcttggtggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagtatgcagggttttcctccaaatttg
ggttctgccttcagtacccctcaatcaccagcaaaagcatttccacccctttcaacccca
aatcagacaactgctttcagtggtattggaggactttcatcacagcttccagtaggtgga
cttggcacaggcagcctgactggtataggaactggggctcttggactccctgcagtgaat
aacgatccttttgtacagaggaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacctgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagaaatagatgatgaagcaaacagctattttcagagaatatataatcatccacca
catccaactatgtctgttgatgaggtattagaaatgttacagaggtttaaagattctacc
ataaagagggaacgagaagtctttaactgtatgctgaggaacttgtttgaagaatatcgg
tttttcccccagtaccctgataaagagttacatataacagcctgcctgtttggtgggata
attgaaaaaggactagtcacttatatggcactaggtctggccctgcgatatgttcttgaa
gccttacgcaagccttttggttccaaaatgtattattttgggattgctgcactagatagg
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctatcagtcac
tttatgcaatttccacatcatttacaggagtatattgaatatggacaacagtctagagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggcc
caggctcaggcccaggttccagcaaaagctccccttgctggtcaggttagcacgatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaggccaaccggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagacacgttgcttgtg
gccacagatcaaactgaaagaattgtagagcccccagaaaatatccaagagaaaattgct
tttatcttcaataatctctcacaatcgaatatgacccaaaaggttgaagaactaaaggaa
actgtgaaggaagaatttatgccttgggtttcacagtacctggttatgaagagagtcagt
attgagccaaactttcacagcctctattcaaacttccttgacacgctgaagaaccctgaa
tttaataagatggttctgaatgagacctacagaaacatcaaagtgctcctgacctctgat
aaagctgcagcgaatttttcagatcgttctttgctgaagaatttgggacattggctagga
atgatcacactagctaaaaataaacccatcttacacactgacttggatgtaaagtctttg
ctgcttgaggcttatgttaaaggacagcaagagttgctctacgtagttccctttgttgcc
aaagtcttagaatctagcattcgtagtgtggtttttaggccacctaacccgtggacgatg
gcaattatgaatgtgttagcagagctacatcaagaacatgacttaaagttaaacttgaag
tttgaaattgaggtcctctgtaagaaccttgcgttagacatcaatgagctaaaacctgga
aacctcctaaaggataaagatcgcctaaagaacttagatgagcaactctctgctccaaag
aaagatgtcaagcagccagaagaactccctcccatcacaaccacaacaacttctacaaca
ccagctaccagtaccacttgtacagccacggttccaccacaaccgcagtacagctaccac
gacatcaatgtctattcccttgcaggcctggcaccacacattaccctaaatccaacgatt
cccttgtttcaggcccatccacagttgaagcagtgtgtgcgccaggcaattgaacgggct
gttcaggagctggtccatcctgtggtggatagatcgattaagattgctatgactacttgt
gagcaaatagtcaggaaggattttgccctggattctgaggaatctcgaatgcgaatagca
gctcatcacatgatgcgtaatttaacagctggaatggctatgattacctgcagggaacct
ctgctaatgagcatatctaccaacctgaaaaacagctttgcgtcagcccttcgtactgca
tccccacaacaaagggaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagtagaaaaagcaggccctgagatggac
aagagattagcaactgaatttgaactgagaaaacatgctaggcaagaagggcgtaggtac
tgtgatcctgttgtgttaacataccaagctgagcggatgccagagcaaatcaggctaaaa
gttggtggtgtggacccaaagcagctggctgtttacgaagagtttgcacgcaatgtgcct
ggcttcctgcccacaaatgatttaagtcagcccacaggatttttagctcaacccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattacagaattggag
cagcacctacatgccatcccgccaactttggccatgaatcctcaagctcaggctcttaga
agtcttttggaggttgtagtattatctcgaaactctcgggatgccatagctgctcttgga
ttgctccagaaggctgtagagggtttactagatgccacaagtggtgctgatgctgacctg
ttgctgcgctacagggagtgccaccttttggtcttaaaagctcttcaagatggtcgggca
tacgggtctccgtggtgtaacaaacagatcacaaggtgcctaattgaatgtcgggatgaa
tataaatacaatgtggaagcagtggagctgctcattcgtaatcatttggttaatatgcag
cagtatgatcttcacctagctcagtcaatggagaatggtttaaactacatggccgtggca
tttgctatgcaattggtaaaaatcctattggtggatgaaaggagtgttgctcatgttact
gaggcagatctattccacaccattgaaactctcatgaggattaatgctcactccagaggc
aatgctccagaaggattgccccagctgatggaagtagtacgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctggaatctctcaagcctca
gaatatgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatcctgaagactgatgac
ctcataacgaggttctttcgtctgtgtactgaaatgtgtgttgaaatcagttaccgtgct
caggcagagcagcagcacaatcctgctgctaatcccaccatgatccgagccaagtgctat
cacaacctggatgcctttgtccgactcattgctctgctagtaaagcactcaggggaggcc
accaacactgtcacaaagattaatctgctgaacaaggtccttggtatagtagtgggagtt
ctcctgcaggaccatgatgttcggcaaagtgaatttcagcagcttccctaccatcgaatt
tttatcatgttgctcttggaactcaatgcacctgagcatgtattggaaaccattaatttc
cagacacttacagctttctgcaatacattccatatcttgaggcctaccaaagctcctggc
tttgtgtatgcctggcttgaactgatctctcatcggatatttattgcaagaatgctggca
catacgccacagcagaagggatggcctatgtatgcgcagctactgattgatttattcaaa
tatttagcgcctttccttagaaatgtggaactcaccaaacctatgcaaatcctctataag
ggtactttgagagtgcttctggttcttttgcatgatttccctgagttcctttgtgattac
cattatggattctgtgatgtgatcccacctaattgtattcagctaagaaatctcatcctg
agtgccttcccaagaaacatgaggctcccagacccattcactcctaatctgaaggtggat
atgttgagtgaaattaacattgcaccccggattcttaccaattttactggagtgatgcca
cctcagttcaaaaaggatttggattcctatcttaaaactcgatcaccggtcacttttctg
tctgatttgcgaagcaacctacaggtatccaatgagcctggcaatcgttataacctccag
ctcatcaatgcactggtgctctacgtagggactcaggccattgcacatatccacaacaag
ggtagtacgccatcaatgagcacgatcacccactcagctcacatggacatctttcagaac
ctagctgtggacttggacactgaaggtcggtatctcttcctgaatgccattgcaaatcag
ctgcggtacccaaatagccacactcactacttcagctgtaccatgctgtacctttttgca
gaagccaacactgaagctatccaagaacagattacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgagctgattaaaaatcca
gcgtttaagttctggaaccacgagtttgtacactgtgccccagaaattgaaaagttattc
cagtcggttgcacagtgctgcatgggacagaagcaggctcagcaagtaatggaagggaca
ggtgccagttag
DBGET
integrated database retrieval system
