Lutra lutra (Eurasian river otter): 125096338
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Entry
125096338 CDS
T08100
Name
(RefSeq) short transient receptor potential channel 4 isoform X1
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv04360
Axon guidance
llv04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
125096338
09158 Development and regeneration
04360 Axon guidance
125096338
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
llv04040
]
125096338
Ion channels [BR:
llv04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125096338
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
Motif
Other DBs
NCBI-GeneID:
125096338
NCBI-ProteinID:
XP_047579191
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All DBs
Position
3:complement(134193260..134396418)
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AA seq
977 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDSSLIEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLIKWIWTHLCKKKMRRKPESFGTIGRRAADNLRRHHQYQEVMRNLVKRYVAA
MIRDAKTEEGLTEENFKELKQDISSFRFEVLGLLRGSKLSTVQAAQATKESSNSADSDEK
SDNEGSSKDKRKNFSLFDLTTLIHPRSAAIASERHNISNGSALVMQEPPREKQRKVNFVT
DIKNFGLFHRRSKQNAAEQNANQIFSVSEEVTRQQAERPMERNIQLESRGLASRGDLNIP
GLSEQCVLVDHRERNMDTLGLQVGKRVCSFKSEKVVVEDTVPIIPKEKHEKEEDSSIDYD
GNLTDTVSHEDYVTTRL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctactacaaaaggaacgtgaatgctccctacagagatcggatccctcta
aggatagtccgagcagaatcagaactctcaccgtcagaaaaagcctacttaaatgctgtg
gaaaagggagattatgcaagtgtcaagaaatccctggaggaagctgaaatttattttaaa
atcaatattaattgcatcgatcctcttggaagaactgctctcctcattgcaattgaaaat
gagaacttggagctcattgaactacttttaagctttaatgtctatgttggagatgcccta
ttacacgctatcaggaaggaagttgtcggagctgttgagctgttactgaaccacaaaaag
cccagtggcgaaaaacaggtgcctcccatactccttgataagcagttctctgaattcact
ccagacattacaccaatcattttggcagcccatacaaataattacgaaataatcaagctt
ctagttcagaaaggagtctccgtgcccagaccccacgaggtccgctgcaactgcgtggaa
tgcgtctccagctcggacgtggatagcctccgccactcacgttccagactcaacatctac
aaggccttggccagcccctccctcatcgcactgtcaagtgaagacccttttctcacagcc
tttcagctaagttgggagcttcaggagctgagtaaagtggaaaatgaattcaagtcggag
tatgaggagctgtccagacagtgcaaacagtttgcgaaggacctactggatcagacaagg
agttccagagaactggaaatcattcttaattacagagatgacagtagccttatagaagaa
caaagtggaaatgatctcgccagactcaaattggccataaagtaccgtcaaaaagagttt
gttgctcagcccaattgtcaacaactgcttgcatctcgctggtacgatgagttcccaggc
tggaggagacggcactgggcggtgaagatggtgacgtgtttcatcataggacttcttttt
cccgtcttctctgtgtgctaccttatagctcctaaaagcccactgggactattcatcaga
aagccatttatcaagttcatctgccatacagcgtcctatttgacttttttgttcctgctg
ctgcttgcctctcagcacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtcgagtggatgatattaccgtgggtcctgggttttatatggggagaaattaaacaa
atgtgggatggtggacttcaagattacatccatgattggtggaatctaatggattttgtg
atgaattccttatatttggcaacgatctctttgaaaattgttgcatttgtaaagtacagt
gcacttaatccacgagaatcttgggacatgtggcatcccaccctggtggctgaagcttta
tttgccatcgcgaacatcttcagttccttgcgcctgatctcgctgtttactgcaaattct
catctggggcctctgcaaatatctctgggaagaatgctcctggacattttgaagtttcta
ttcatatactgccttgtgttgctagcatttgcaaatggcctaaatcaattgtatttctat
tatgaagaaacaaaagggttaagctgtaaaggcatacgatgtgaaaagcagaataatgca
ttttcaacattatttgagacgctccagtccctgttttggtcaatatttgggctgatcaac
ttatatgtgaccaatgtcaaagcacagcatgaattcactgagtttgtgggtgccaccatg
tttgggacgtacaatgtcatctctctggttgtcctactcaacatgttaatagctatgatg
aataattcttaccaactcattgctgaccatgcagatatagaatggaaattcgctagaaca
aagctttggatgagttattttgaagaaggtggtactctgcctactcccttcaatgtcatc
ccgagccccaagtctctctggtacctgatcaaatggatatggacacacctgtgcaagaaa
aagatgaggagaaagcctgaaagttttggaacaatagggaggcgagctgctgataatttg
agaagacatcaccaatatcaagaggttatgaggaacctggtaaagcgatacgttgccgca
atgatcagagatgccaaaactgaagaagggctgactgaagagaactttaaggaactaaag
caagacatttccagtttccgcttcgaagtcctggggttgctacgaggaagcaaactctcc
acagtgcaggcggctcaggccacgaaggagtcctccaattcggccgactcggatgagaag
agcgataacgagggcagcagcaaggacaagcgaaagaacttcagcctgttcgacttaacc
acgctgattcacccacgatcagcagccattgcctccgaaagacacaacataagcaacggc
tcggctctggtgatgcaggagcccccgagggagaagcagagaaaagtgaattttgtgacc
gatatcaaaaacttcgggttatttcacagacgatccaaacaaaacgctgctgagcaaaat
gcaaaccaaatcttctctgtttcagaagaagtcactcgtcaacaggccgaaagaccaatg
gagagaaatattcaactggaatctcgagggttggcttcccggggtgacttgaacatcccg
ggtctcagcgaacagtgtgtattagtagaccaccgagaacggaatatggacaccctgggc
ttacaggtgggcaagagagtgtgttccttcaagtcggagaaggtggtggtggaggacacc
gtcccaatcataccaaaggagaagcatgagaaggaagaagactctagcatagactatgac
gggaacctcacagacacagtcagccacgaggattacgtgaccaccagattgtga
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