KEGG   Lutra lutra (Eurasian river otter): 125101917
Entry
125101917         CDS       T08100                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
llv  Lutra lutra (Eurasian river otter)
Pathway
llv03030  DNA replication
llv03410  Base excision repair
llv03420  Nucleotide excision repair
llv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:llv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125101917
   03410 Base excision repair
    125101917
   03420 Nucleotide excision repair
    125101917
   03430 Mismatch repair
    125101917
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:llv03032]
    125101917
   03036 Chromosome and associated proteins [BR:llv03036]
    125101917
   03400 DNA repair and recombination proteins [BR:llv03400]
    125101917
DNA replication proteins [BR:llv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    125101917
  DNA Replication Termination Factors
   ELG1-RFC complex
    125101917
Chromosome and associated proteins [BR:llv03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    125101917
DNA repair and recombination proteins [BR:llv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     125101917
  Check point factors
   HRAD17(Rad24)-RFC complex
    125101917
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_assoc_2 AAA_lid_RFC1 AAA_16 DUF815 AAA_22 AAA_11 AAA_30 Mg_chelatase AAA_24 SLFN-g3_helicase AAA_28 RuvB_N AAA_19 AAA_5 ResIII Viral_helicase1 AAA_7
Other DBs
NCBI-GeneID: 125101917
NCBI-ProteinID: XP_047588457
LinkDB
Position
1:complement(110516899..110532841)
AA seq 363 aa
MQAFLKGTSVSTKPPLKDRGVAATVGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAV
LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE
KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN
YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA
ITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGIFAACQSGSFDKLEAVVKDLIDEGH
AATQLVNQFHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLT
QNC
NT seq 1092 nt   +upstreamnt  +downstreamnt
atgcaggcttttctaaaagggacatctgttagtactaaaccaccgctgaaggatcgagga
gtagctgccacagttggaagcagtggagagaacaagaaaaccaaacctgtcccatgggtg
gaaaaatatcgcccaaaatgtgtggatgaagttgctttccaggaagaagtggttgcagtg
ctgaaaaagtctttagaaggagctgatctccctaatctcttgttttatgggccacctgga
actggaaaaacatccactattttggcagcagctagagagctttttgggcctgaacttttt
cgattaagagttcttgaattaaatgcatctgatgaacgtggaatacaagtagttagagaa
aaggtgaagaattttgctcaattaactgtgtcaggaagtcgttcagatgggaagccatgt
cctccttttaagattgtgattctggatgaggcagattctatgacctcagctgctcaggca
gctttacgacgtaccatggagaaggagtctaaaaccacgagattctgtctcatctgtaac
tatgtcagtcgaataattgaacctctgacgtctagatgttctaaattccgattcaaacca
ctgtcagataaaattcagcagcagcgattactagacattgctgataaagaacatgtcaaa
attagcaatgagggaatagcttatcttgttaaagtgtcagaaggagatttaagaaaagcc
attacatttcttcaaagcgctacccgattaacaggtggaaaggagatcacagagaaggtg
attacagacattgctggggtaataccagcagagacaattgatggaatatttgctgcgtgt
cagagtggctcatttgacaaactagaagctgtggtaaaagacttaattgatgagggtcat
gcagcaactcagcttgtaaatcaatttcacgatgtggtggtagaaaatgataacctttct
gataaacagaaatccattatcacagaaaaacttgccgaagtagacaaatgcttagcagat
ggtgctgatgaacatctacaattgatcagcctctgtgcgacagtgatgcagcagttaact
cagaattgctga

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