Leishmania major: LMJF_21_0800
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Entry
LMJF_21_0800 CDS
T01014
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lma
Leishmania major
Pathway
lma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMJF_21_0800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_21_0800
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LMJF_21_0800
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LMJF_21_0800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
5651618
NCBI-ProteinID:
XP_001683015
UniProt:
Q4QCD3
LinkDB
All DBs
Position
21:257809..264570
Genome browser
AA seq
2253 aa
AA seq
DB search
MLYDRVNDIGSSQGEAIRYILGAVSKSTVQTTLTTLEQFCSRSVELHRYTIKATCTALLA
ARSDERSLLASRLVSEALGRPNGLTLVACALDGCSSTLTKESLTALMANDLKLSPMKQMQ
MAMALVLGGNAMVKAAATDILEDFNVPQAALKEDDGGVRAAALLSRQVGLAPENLDGQLA
NVCHTVALPKPKTEVKPRVSVAGVLRELGTGCVTTLADSRELLSIFPHSFTERDGAEVLA
FFASAGSAVNDSSTYASLMTASGKSSPKSMSGTTTLVNAMPLLDALCEGSPKGFNWDLVI
RMLDQPDGGPFRVKHISVIFDAYHRFQPDNEFPSVALFLGRWTNTMRQRSVLEYILRHPD
KVNRKPLAIDAPSELLPATKPPGVTTAEMDLWRSTAFMEAAVHVASREKDFDNDVFRPAA
EKLPLLFLYSLFTGNFQGTVKHFTSMKHLLKAHCPSLDLVSQHIVPEMERRGRLSTVIGV
LSDLTEAAPERLVDVLQVVFKCKSAAKRVLAESGSPRLVTAVAMCMEEAGESSDKWLQRA
LEGKLHFRASSTENRFAVAMSIVEVAEMLLEKQLYTVSATAALNALLASPLKEVLKSVTD
CAKALLASTDSLFPDDVENEALEFFKKMYAAGSTAAAIATVENLLKSTVPRDKQLYACIV
GIMFDETSAISCYPRKELQLFAELYGQMIAKDLLPPNQQQRAWGVLLPAVAKPGNYAMEE
YGIIALEQVKPRLPDWPQYGRALRYVRDLDFRVPGIVAAINRGIKQEDAAARGGAATSAE
PGEGSPTSPTSPKQPGSPNKALAAIDPAIVSAASSQSKKFTDMAAAKLHTLDIGTLVTNA
NVTAPPRVIQEQINFLIGNTDVRNLESNATELSQLLRPEYYEYFADYLVVKRAALEPNYH
SMYIELIAKLHSKDMERALRKATIGAVHRLLSSQKIGTDSSERILLRNLGSWLGSITLEK
NIPILQQDLHFKSLLCQGIREGKLVPVVSFITRVLTSCAKSRFFCPPNPWTMAQLVLLME
MYTLPHLRVTLRFELELLLKSLDQSMQDLAQYMRLHASHASTETRLRDVYDEININESPD
FRVGEDESNVSAAVVAAQPAPATASPPMQQSLRSSARPLQASAEPFQPKDKAQAPPSEVS
RVMQMLNKPIRPPIGISLNWVFSTLSDPAFGNNAQRLTDHRLEIVAQLQAVVDEAVSYCM
QRSVAIAARTTERLVLKDYARDPFPDDMLVAGDAMARSLASSLSYVMVRDELPLLLHRSM
TNLLERILAPYTPLEHKATIRDTLVARNVELCMRAVEYSVGEEAATATSRFLFDVAREKA
SAFAEQEPLPLPPDQVEAAELLRVMGETLVPSGRMPAPQRDVYDDFYSCVPPVAVFNMVL
RSVEEAVSRYHSNENSPPLDFAQLDAASQKPGGLTDDAQAPIRQHLGRLMSLITEESSPY
FLSPMLNKLMSLAVSTERLAKLVNSSAKNTQAAAATAAAAAAVTNPDGTPSAAEDPAWQQ
EALRISAALHQLYLRIVLRCRECGEETNRDELTRLFLRHSHCYSFSKLTTDLIRIKVLKC
SEFDDALAKALTNGTSNYVTFAGDIITDVIIKEKLVASKDMRRTLMALDTIARTRAPRAA
PAAPAQTLPSYVTEPPLSKIVPSQVTKLLVPCDCVRPGEDEAFQKEVGQLMNDWITVWSQ
KSHRYAEKRIPSVEFVKTLQQRRMLDTAHLQTFLSLGVRYCVEYYVDTMLAMERADGNIS
SETLVGTRPGGPPGYRTPYTAKPFVMCDGFVELVMVLLQCCSLRNEASHDLRAETTLLRR
VLDAVTRVLTEHHNFVAKARPAPAWTLAADEQFVPLFQQQPYVRLLSNLVYSLHRLEIST
TRAMSTEFTSAFHTFLRRVHPMEYPGFVFGWLEILSHRHIIPRFMNVQSMWPHYVDLLAG
AMMFVKFLIKGNRISPNGLVFYKSLLKLVLVLLHDYPRFLIAQHYPLCEAISLSCVQLLN
TVLCSFPPDKRLPEPFPHVDSNDPAMLQVLDTSVQEACIKDAFTSFNVQPQLLASLEMMI
TNDDAPVRDSVLTDVLNDLTQASTKRSLINAVVQHMAIVYLRTHDNRIPANFAKSNVLAC
YRFLCSRLNTKRRYYMLGACANQLRFPNIQTNFFANVVLNLFLPSPTVDAQTQTCVQEQI
TRVLAEKTVIVQPHPWGVLNTFVELMREPKYKFWETSFIHYAPLDSMFTKLHHTVHTRLS
KTGGGGAAALDGGRGDSVNVAATTSSIGAAPSA
NT seq
6762 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatgatcgcgtgaacgacattggcagctcgcagggggaggcgattcgctacatc
cttggcgccgtctccaagagcaccgtgcagacaacgctgacgacgctagagcagttctgc
tcccgctccgttgagctccaccggtacacgatcaaggccacatgcacagccctgctggca
gcacggagcgatgagcgatcactgctggcatctcggttggtgagcgaggcacttgggcgg
ccgaacgggctgaccctggttgcctgcgccctcgacggctgctcctcgaccctgacgaag
gagtccctcactgcgttgatggcgaacgacctcaagttgtctcccatgaagcagatgcag
atggccatggcactcgtgcttggcggaaacgcgatggtcaaggcggcagcgacggatata
ctggaggacttcaacgtgccgcaggcggcgctgaaggaggacgatggcggcgtgcgtgcg
gcggcgctactgtcgcggcaggtaggccttgcccccgaaaacctggacggtcagctggcg
aacgtgtgccacacggtcgcgttgccgaagccgaagacggaggtgaagccgcgcgtaagc
gtggcgggcgtcctgcgcgagctaggaacagggtgtgtgacgacgctggcggactcgcgc
gagctgctcagcatttttccgcactccttcacagagcgcgacggagccgaggtgctcgcc
ttcttcgcttccgcgggctcggccgtcaacgacagcagcacgtacgcgtctctcatgacg
gcgtcggggaagagctcgccaaagagcatgagcgggacgacgacgctcgtgaacgcgatg
ccgctactcgatgcgctgtgtgaggggagcccgaagggcttcaactgggaccttgtcatc
cgcatgcttgaccagccggacggcgggccgttccgcgtgaagcatatctcggtcatcttt
gacgcgtatcaccgcttccagccggacaacgagttcccgtctgtggcgttgtttctaggc
aggtggacgaacacgatgcgccagcgcagcgtgctcgaatatatcttgcgccaccccgac
aaggtcaatcgcaagccgctcgcgatagatgccccgtcggagctgttgccggcgacgaag
ccgcccggtgtgacgacagccgagatggacttatggcgctctacggcgttcatggaggct
gccgtgcacgtggcgagtcgcgaaaaagacttcgataacgacgtgttccgccccgccgcg
gagaagctgccgctgctcttcttgtacagcctcttcacgggcaacttccagggcacggtc
aagcacttcacgtccatgaagcacctgctcaaggcccactgcccctctctggacctcgtg
tcgcagcacattgtgcccgagatggagaggcggggtcgactcagcaccgtgatcggcgtg
ctctcggacttgacggaggccgcaccagagcgtcttgtggacgtgctgcaggtggtcttc
aaatgtaagtctgccgcgaagcgcgtgctcgccgagagcgggagccctcgcctcgtcact
gctgtcgccatgtgcatggaggaagcaggtgagtcgagtgacaagtggctccagcgcgcg
ctggagggcaagctgcacttccgcgccagctccacggagaaccgcttcgccgtggccatg
agcattgtcgaggtagctgagatgctcctggaaaagcagctctacacggtgagcgcgacg
gcggctctcaacgccctgctcgcctccccgctgaaggaggtgctgaagagcgtgacggac
tgcgccaaggcgctgctcgcctcgacggactctctcttccccgatgacgtagagaacgaa
gcgctggagttcttcaaaaagatgtacgccgctggcagcaccgcggctgccattgccact
gtcgagaacctgctgaagagtacagtgccacgcgacaagcagctctatgcgtgcatcgtg
ggtattatgttcgacgagacgtccgccataagctgctacccgcgcaaggagctgcagctg
ttcgccgagttgtacggccagatgatcgcgaaagatctgcttccgccgaaccagcagcag
cgcgcgtggggtgtcctgctgccagccgtcgcgaagcccggcaattacgcgatggaggaa
tacggtattatcgcgctcgagcaggtgaaaccgcggctgccggactggccgcagtatggt
cgcgctctgcgctacgttagggacttggatttccgcgttcccggcatcgtcgccgccatc
aaccgtgggatcaagcaggaggatgccgctgcgcgtggcggcgcagcgacgtcggcggag
cccggtgagggaagcccaacctcgccaacgtccccgaagcagcctggctcgccgaacaag
gcgctcgctgccatcgacccggctatcgtgtcggcggcgtcgtcgcagtcgaagaagttc
acggacatggcggcggcgaagctgcacacgctggacatcggtacactcgtgacgaacgcg
aacgtgacggccccgccgcgcgtgattcaggagcagatcaacttcctcattggcaacact
gacgtgcgcaacctggagagcaacgcgacagagctgtcacagttgctgcggccggagtac
tacgagtactttgcggactacctggtggtgaagcgcgcggcactggaacccaactaccac
tctatgtacattgagctgattgcgaagctgcactccaaggacatggagcgcgcactgcgc
aaggccactatcggtgcagtgcaccgtctgctgagctcacagaagatcggcaccgactca
agcgagcgtattctactgcgcaaccttggctcctggcttgggagcatcacgctggagaag
aacatccccatcttgcagcaggacctgcacttcaagtcgctcctctgccagggtattcgc
gagggaaagctggtcccggttgtctcgttcattacacgcgtcctgacaagctgcgccaag
tcgcgcttcttctgcccgccaaacccgtggactatggcgcagctggtgctgctgatggag
atgtacacgctaccccacctgcgcgtgacgctgcgcttcgagctggaactgctgctgaag
tcgctggatcagtcgatgcaggacttggcgcagtacatgcggctgcatgcctctcacgcc
tccaccgagacgcgcctgcgcgacgtgtacgatgagatcaacatcaacgaaagccccgac
ttccgcgtcggtgaggatgagagcaacgtgtctgcggcagtcgtcgcagcgcagccggcg
ccggctaccgcatcaccgccgatgcagcagtcgctgcgcagcagcgctcgcccgctgcaa
gccagcgcagagccgttccagcccaaggacaaggcgcaggcaccgccgtccgaggtgagc
cgtgtcatgcagatgctgaacaagccaatccgccctccgatcggcatctcgctgaactgg
gtgttttccacacttagcgatcccgcctttggcaacaacgcccagcgtctcactgatcat
cggctcgagattgttgcgcagctgcaggccgtggtcgacgaggccgtgagctactgcatg
cagcgcagtgtcgctatcgccgcccgcacgacggagaggctggtgctgaaggactatgcg
cgcgacccgttccccgatgacatgctcgtcgctggcgatgccatggcccgctcactggca
tctagcttgagctacgtgatggtgcgcgatgagctgccgctgctcctgcaccgctccatg
acaaacctgctggagcgcattctggccccctatacaccactggagcacaaggcaacaatc
cgtgacaccctggtggcgcgcaacgtggagctgtgcatgcgtgcagtggagtacagcgtc
ggtgaggaggcggcgacggctacgagccgattcctattcgacgtcgcgcgcgagaaggcc
agcgcctttgcggagcaggaacctctgccactgccgccagaccaggtcgaggccgcggag
ctgctgcgcgtcatgggtgagacgctcgtgccgtctggccggatgccggccccgcagcgg
gatgtctacgatgacttctacagctgcgtgccgcctgtggccgtgttcaacatggtgctg
cgcagcgtcgaggaggcggtgtcgcggtaccactcgaacgagaactccccgccgctggac
tttgcgcagcttgacgccgccagccagaagccgggcgggttgactgatgacgcacaggcc
cccatccgccagcacctgggccgtctcatgagcctcatcacggaggagtcgagcccctac
ttcctcagccctatgctgaacaagctcatgtccctcgccgtatccacggagcggctggcc
aagctggtcaacagcagcgccaagaacacgcaggctgctgctgctaccgctgctgctgcc
gccgctgtcaccaaccccgacggcaccccgagcgcggcggaggacccggcatggcagcag
gaggcgctgcgcatctccgcagcgctgcatcagctgtacctgcgcattgtgctacggtgc
cgcgagtgtggcgaggagacgaaccgcgacgagctcacgcggctgttcctgcgccacagc
cactgctactccttctcgaaactgacgacagacctcatccgcatcaaggtcctgaagtgc
agcgagttcgatgacgccttggcgaaggcgctgaccaacggcacgtccaactacgtcacc
tttgcaggtgacatcatcaccgacgtcatcatcaaggagaagctcgtggcatcgaaggac
atgcgccgaacgctcatggccctcgacacgattgcgcggacgcgagcgccgcgcgccgcg
ccggcagcgccggcacagacgcttccgtcgtacgtcacggagccgcctctgagcaagatt
gtgccgagccaggttacgaagctcctcgtcccgtgcgactgcgtccgccctggcgaggac
gaggccttccaaaaggaagtggggcagctcatgaatgattggatcacggtgtggtcgcag
aagagccaccgctacgctgagaagcgcatcccgtccgtcgagtttgtgaagacgctgcag
cagcgtcgcatgctggacacggctcacctgcagaccttcctgagcctgggcgttcgctat
tgtgtggagtactacgtcgacacaatgcttgcgatggagcgcgcagacggcaacatctcg
agcgagacgttggtgggcacgcggcctggcggcccgccaggctaccgcactccgtacacc
gccaagcccttcgtcatgtgcgatggctttgtggagctggtcatggtgctgctgcagtgc
tgctcgctgcgcaatgaggcctcgcacgacttgcgggccgagactacgcttctacgccgc
gtgctggatgctgtgacgcgcgtgctgacggagcaccacaactttgttgccaaggctcgc
cctgcccctgcgtggacgctcgcggccgatgagcagttcgtcccgctctttcagcagcag
ccgtacgtgcgcttgcttagcaacctggtatactcgcttcaccggctggagatctcgaca
acgcgtgccatgtcgacagagttcacgagtgccttccacacgtttttgcgccgcgtgcac
ccaatggagtacccgggctttgtttttggctggctggagatcctgtcgcaccggcacatc
atcccacgctttatgaacgtgcagtcgatgtggccccactacgtcgacctcctcgccggt
gccatgatgtttgtgaaattcttgatcaagggtaaccgcatctccccgaacggcctggtc
ttctacaagtcgctgctgaaactcgtgctggtgctcctgcacgactacccgcggttcctg
atcgcacagcactacccgctctgcgaggccatttcgctttcgtgcgtgcagctgctgaac
acggtgctgtgctccttcccacctgacaagcgcctgccggagccgttcccccatgtcgac
tccaacgatccggcgatgctgcaggtgctcgacacatccgtgcaggaggcgtgcatcaag
gacgccttcacctccttcaacgtgcagccgcagctcctggcgagtcttgagatgatgatc
acgaacgatgatgcaccagtgcgcgacagcgttctgaccgacgttctgaacgacctgacg
caggcctcgaccaagcgcagcctcatcaacgccgtggtgcagcacatggccatcgtgtat
ctgcgcacccacgacaaccgcatccccgcgaactttgcgaagtcgaacgtactcgcgtgc
taccgcttcttgtgcagccgcctcaacacgaagcgtcgctactacatgctcggcgcctgc
gccaaccagctgcgtttcccgaacattcagacgaacttctttgcgaatgtggtgctgaac
ctgtttctgccgtcgccgactgtggacgcacagactcagacctgtgtgcaggagcagatc
acgcgcgtgctggcggagaagacggtgattgtgcagccgcatccgtggggcgtgctcaac
acctttgtggagctgatgcgcgagcccaagtacaagttctgggagacctccttcattcac
tacgcccccctcgactccatgttcacgaagctgcaccacacagtgcacacacggttgagc
aagactggcggtggcggtgccgctgctctcgacggaggccgaggcgattcggtcaatgtc
gcggcgaccacctccagcatcggtgccgcgccttcggcgtag
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