Leishmania major: LMJF_30_0250
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Entry
LMJF_30_0250 CDS
T01014
Name
(RefSeq) putative ubiquitin hydrolase
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
lma
Leishmania major
Pathway
lma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMJF_30_0250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lma03019
]
LMJF_30_0250
Enzymes [BR:
lma01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
LMJF_30_0250
Messenger RNA biogenesis [BR:
lma03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LMJF_30_0250
mRNA degradation factors
3'-5' decay
Pan complex
LMJF_30_0250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
UCH_1
Beta-prop_EML_2
UCH
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
5653543
NCBI-ProteinID:
XP_001684614
UniProt:
Q4Q7T4
LinkDB
All DBs
Position
30:complement(72262..75657)
Genome browser
AA seq
1131 aa
AA seq
DB search
MSLSSQGSTPWKFRGDATASVGAITAVEFDPDVELLWVCDAFGTLMSFSLQSQGQGEAPA
WVNYSSFSVSSRPVTNIFFLNMGGERMVTVADREVIRGYKRGGVLMMCLPQPTAVQNYID
LFQANNSTGAMFYTGNAGLTRLILNHQETDQLTVPMEATVVALKQCDRWVATGSASGAVY
VRSASDLSVVGQVSPSRNRVMALEVFDNTVMAAYSERSATSFVKVFDVRKMSEAVSTIQD
IPSGNVTQMRRYQDGFGLSSDRAFLLSPAGFHIIQLDQEKPVFSSSPLSEGSCTAVAVSP
SNMCAAIGNDKGTFYALAHPATRDDYVMSTFVQPVRPKHPVYHHSWEEPNIADGFDDSVD
LGTLASNWPEEDYMILTVPQKLRCVNYESHSIVPNEWGLMRADSCLPDPKDKLSSILPNP
YPFNTQLGDDPACAQEALLELRKDMKRKHKSSRGGGGEYSPMEDSLQVCYSVQHKLDWRS
YNEIAQRVIGIDNSFPECWITPLLQSLYLCQPPEFPIRKVILRHICKREFCMTCEIAFIF
ANMLTTSASVVGMKGEALPPIVPVAHFIRTLRQIRAFANTDVFQRPKNRDDAVAKMHLAQ
RLVLETLHKDLQDQKAYPFMNYEAPPEYEGAIAALFGTEFTSNGRVHIEPRFYWEVPGSA
LKVDEGLQHLLKQLEGYKDQVQIKQLPPIIVLLLNPEHSNLKPPTSLKISRAGKEDYNYV
LNSNIVHLADDVEDTGNFVSQQRIKDDSFSLVNDYRVTAPMKMQELERLVPALRSYSAVV
TFYALDNLTTPPYARLDDSRTPNLWHLLGPLLINDVLSRPLLRDPAKQAFRSPLSSYTEI
RPGDLIAIDAEYVVLKWASRDEGNEMFYVSQRKPHMGLARVSCILSSKDGDERTIVDDYV
HIPEEIEDYVTQYSGIHPGDLDPLESSKSLTSLKSTYLKLRALVDGGVVFVGHGLAQDFR
VCNIVVPRKQIIDTLEIFHKPGSRYLSLRFLAYHVLGESVQEDEHDSIEDARTSLRLYRK
YQQLKSEGTFEGVLDHLLAKGAETSWYVPDTKSLFRDTPQTPPVSVMGSPVLEKMAKAVQ
EDDEKDVNTFDMAAAAAVAAATDGDEDDEDGDDDAPTASEVLEAVRKSMER
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcagctcgcaaggtagcacaccgtggaaattccgcggcgatgccacggcgtct
gttggggccatcacggcggtggagttcgaccctgatgtggaactgctttgggtgtgcgac
gccttcggcacgctcatgagcttctcgctgcagtcgcagggccagggtgaggccccggcg
tgggtgaactactcgtcgttctccgtctccagccgccctgtcacgaatattttcttcctc
aacatgggtggcgagcgtatggtgacggtggcggaccgggaggtgatccgcgggtacaag
cgcggtggcgtgttgatgatgtgcctgccgcaacctaccgccgtgcagaactacatcgac
ctcttccaggctaacaacagcactggcgcgatgttctacaccggcaacgctggcctgacg
cggctgatcctcaaccatcaagagacggaccagctcaccgttccgatggaggcgacggtg
gtggctctgaagcagtgcgaccgatgggttgccaccgggagcgcctctggcgccgtgtac
gtgcgcagtgcgtctgatcttagcgtggttggccaggttagcccgtcgcggaaccgcgtc
atggcgctggaggtgttcgacaacacggtgatggcggcctactcggagcggtcggcgacg
tcctttgtgaaggtgttcgatgtgcggaaaatgtcggaggcggtgtcgacgattcaggac
atcccgtctggcaatgtgacacagatgcgccgctaccaggacggcttcgggctgtcgagc
gaccgcgccttcctgctgtcgcccgcaggcttccacatcatccagctggaccaggagaag
ccggtgttctcgtcgagcccactgagcgagggcagctgcaccgccgtggctgtctccccg
tccaacatgtgcgcagccatcggtaacgacaagggcaccttctacgccctcgcccaccca
gccacgcgagacgactacgtgatgtccacgtttgttcagccggtgcgaccaaaacacccc
gtctaccatcacagctgggaggagccgaacatcgcagacggcttcgacgactcggtcgac
ctcggcaccctcgcctccaactggccggaggaggactacatgatccttaccgtgccgcag
aagctgcggtgcgtcaactacgagtcgcacagcattgtgccgaacgagtgggggctgatg
cgggcagacagctgcctgccagatccgaaggacaagctcagctccatcttgccgaacccg
taccccttcaacacgcagctcggcgacgacccggcctgcgcgcaggaggcgctgctcgag
ctgcgcaaggatatgaagcgcaagcacaagtcctcgcgtggtggcggcggcgagtacagc
ccgatggaggactccctgcaggtctgctacagcgttcagcacaagctggactggcgcagc
tacaacgagatcgcacagcgcgtcatcggcatcgacaacagcttccctgagtgttggatc
acgccgctcctgcagtcgctctacctgtgccagccgcccgagtttcccatccgcaaggtc
atcctgcggcacatctgcaagcgggagttttgcatgacgtgcgagattgccttcatcttc
gccaacatgctgaccacgtccgcgagtgtggtggggatgaagggcgaggcgctgccaccg
attgtgccggtggcgcacttcattcggacgttgcggcagatccgtgccttcgcgaataca
gacgtgttccagcggccaaagaaccgtgatgatgcggtggcgaagatgcacctggcgcag
cggctggtgctggagacactgcacaaggatctgcaagaccagaaggcctaccccttcatg
aactacgaggcaccgcccgagtacgagggcgccatcgcagctctctttggcaccgagttc
acttcaaacggccgcgtgcatattgagccgcgcttctactgggaggtgcccggctctgca
ctcaaggtggatgaggggctgcagcacctgctgaagcagttggaggggtataaagatcag
gtacagattaagcagcttccacccatcattgtgctgctactgaacccggagcacagcaac
ctgaagccgccaacgagcctcaagatttcgcgtgcgggcaaggaggactacaattacgtg
ctgaacagcaatatcgtgcacctcgccgacgacgtggaggacacgggcaatttcgtcagc
cagcagcgcatcaaggatgacagcttttcactcgtgaacgactaccgcgtgacggcgccc
atgaagatgcaagagctggagcgcctggtgcctgcgctgcgctcctactcggctgtggtc
acattctacgcccttgacaacctcaccacgccgccgtacgcccgcctcgacgactcgcgc
acccccaacctgtggcatctacttggccccctgctgataaacgacgtgctgtcgcgtccg
ctgctgcgagacccagcgaaacaggccttccgatcacccttgtcttcgtacacggagatc
aggcctggcgacctcattgccatcgacgcggagtacgtggtgctcaaatgggcgagccga
gacgagggcaacgaaatgttctacgtgtcgcagcgcaagccgcacatgggcctagcccgt
gtgagctgcatcctgagcagcaaggacggcgatgagcgcaccatcgtggacgactacgtg
cacattcccgaggagatcgaggactacgtgacgcagtacagcggcatccaccccggtgac
ctcgacccacttgagtcgtccaagagcctaacgtcgctcaagtcgacgtacctgaagttg
cgcgcgctggtcgacggcggcgttgtctttgttggccacggcctcgctcaagactttcgc
gtctgcaacatcgtcgtgccgcgcaagcagatcatcgacacactcgagatattccacaag
cccgggtcccggtacctctcgctgcgcttcctggcataccacgtgctcggcgagagcgtg
caagaggacgagcacgactccatcgaggacgcccgcacgtcactgcgtctctaccgcaag
taccagcagctcaagagcgagggcaccttcgaaggcgtgctggaccatctcttggcaaaa
ggtgcggagacgagctggtacgtgcccgatacgaagtcgttgttccgcgacaccccgcag
accccgccagtgtccgtgatgggttcacctgtactcgagaagatggcaaaggccgtccag
gaggacgacgaaaaagacgtaaacacgttcgacatggctgctgctgctgcggttgcggcg
gcgaccgacggcgacgaggatgacgaagacggcgacgacgatgcccccactgccagcgaa
gtgctggaggccgtgcgcaagtccatggagcgttag
DBGET
integrated database retrieval system
