Candidatus Lucifugimonas marina: GKN94_00450
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Entry
GKN94_00450 CDS
T10105
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lmaj Candidatus Lucifugimonas marina
Pathway
lmaj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmaj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GKN94_00450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmaj03021
]
GKN94_00450
03400 DNA repair and recombination proteins [BR:
lmaj03400
]
GKN94_00450
Enzymes [BR:
lmaj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GKN94_00450
Transcription machinery [BR:
lmaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GKN94_00450
DNA repair and recombination proteins [BR:
lmaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GKN94_00450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
WFG34211
LinkDB
All DBs
Position
94971..98894
Genome browser
AA seq
1307 aa
AA seq
DB search
MVIADRRLAPSEQPGYKGFNSIANNVDVPSLVQVQVNSFEWLKTDGLKDLLDEISPIEDF
SGGRFDLEFVGHEVREPKYTERECRKREITYSAPLYITVKLVIKETGEIKEQTLFFGDVP
MMTRNGTFVINGAERVVVSQLVRSPGAYFTTKADPATGRELCSAKLIPYRGAWVELETSN
KDLLSVKVDRKRKAPISTLLRALGWTTDDEILGLVSDVDDDPVHRFMEATLAKDTDDQTE
EEALLEFYRRLRPGEPPSVDNARELIENLFFNDRKYDLGRVGRYKLNRRLGLDEKTRTLT
KNDIAELIRRMITINNGRASNDDIDHLGNRRVRAVGELIQNQLRVGLLRMERVVKERMTT
QMDPTTTTPAALINIRPVVAAVREFFGGSQLSQFMDQTNPLAELTHKRRLSALGPGGLSR
ERAGFDVRDVHASHYGRICPIETPEGPNIGLLGSLSTYARLNSYGFIETPYRKILRSMSS
QNPDIQGRTPLEDIADDNGKVIAEAGKPITIPMAEVVNALSPRDVAVQAYVTTAEADRDY
LSADDEEQNTIGQATTPMDAKGQITTELVEVRQGGSEAYTYVHPDEVNYLDVSPMQIVSI
STALIPFLEHDDANRALMGSNMQRQAVPLIKPQAPLVGTGMEWRVATDSGQVVMSETDGV
VSESTSDYVKILDEAGETTEYPLTKFVRSNQGTSINQHPIVHKGDKVIKGSPLADSSSTD
NGELALGQNLLVGFMTFDGFNYEDAIILNEDLVKDDRYTSIHIDKHEVEARETKLGPEEI
TRDIPNVGEESLRDLDDEGIVRIGAWVTPGDILVGKITPKGETELTAEEKLLRAIFGEKA
RDVKDTSLRVPHGQHGKVIDVRILTKENGDDMQPGVTKTVRVWVAHTRKINQGDKMAGRH
GNKGVVAKVLPREDMPFLPDGTPLDIMLNPIGVPSRMNLGQLLETHLGWAANTLGFHART
PVFDGAQDSVIEDQLARAWFVRESNAKDKRDLDTAEIDWTKVDTYLEERGFDRDRLWSDA
QSNRGVAREACLRIWLNEVAGVETTDMKPSELMQESLKVSRERNLSAPIFGKQMLMDGRT
GLPYDAPITVGNVYMLKLIHLVQDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWA
LEAYSAAYTLQEMLTIKSDDVIGRVKTYEAIVKGEEVIQPGVPESFHVLLKELQGLGLSV
ELLNEDIERFTQAQTQSQEMSATLGAPLDWNDLSDEPLDALDIEELAVGDEPVAIVEDDS
DDEESAGADSDDDDEAEEPTEDSLQTLASEDSEDVSDDLPGVEDEEN
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
atggtcatcgctgatcgtcggttagccccatctgagcaacccggttacaaaggcttcaac
agcatcgccaacaacgtcgacgttccaagtctcgttcaggttcaggtcaattcattcgaa
tggctgaaaaccgacggactcaaggacctcctcgatgagatttcccctattgaggacttc
tctggtggtcgattcgatctcgaatttgtaggtcacgaagttcgtgagcctaagtacacc
gagcgtgaatgccgtaagcgcgaaataacctattcggctccgctctacatcacagtaaag
ctagtgattaaagagacgggtgaaatcaaggaacagactctgttctttggtgacgtgccg
atgatgactcgcaacggtacattcgttatcaacggtgccgaacgtgttgtcgtttcgcag
ctggttcgatcaccgggtgcatatttcacaaccaaggccgaccctgcaacgggccgtgag
ctttgcagtgcaaaattgattccttaccgtggtgcatgggtcgagctcgaaacgagcaat
aaagaccttctatcggtgaaagtcgataggaagcgcaaggctccgatttcgactttgctc
cgagcactcggttggacaaccgacgacgaaattctcggtttggtttcggatgtagatgat
gacccggtacaccggttcatggaagctacgcttgccaaagacactgacgaccagactgaa
gaagaggcacttctcgagttctaccgacgactacgccctggcgagccgcctagtgtggac
aacgctcgtgaactgatcgagaacttgttcttcaacgaccgaaaatacgacctaggtcgt
gttggtcgatataagttgaatcgacgattgggtctcgacgaaaagacacgaactcttacg
aagaacgacatcgccgaacttattcgacgaatgatcaccattaacaatggccgagcgtct
aacgacgatatcgaccacttgggtaaccgccgagtgcgtgccgttggtgaacttattcag
aaccagcttcgtgttggacttctgcgaatggaacgcgttgtaaaagaacgcatgaccacg
cagatggacccaactacgacaactcctgcagcgctgatcaatatcaggccagtagttgcg
gcagttcgtgagttcttcggtggatcgcagctttcacagttcatggaccagaccaaccca
cttgctgaactgacgcacaagcgtcgactatcagcacttggacctggtggactttcacga
gagcgtgccggatttgatgtacgtgacgtacacgcatctcactacggacgaatctgccca
attgagactcctgaaggaccaaacattggtctgcttggttctctatcgacgtatgcacga
ttgaacagctacggattcattgagactccgtaccgcaagattcttcgttcgatgtcgagc
cagaacccagatattcagggtcgaacaccgctcgaagacattgccgacgataacggcaaa
gtcatcgcagaggctggcaagccgatcacaattccaatggcggaagttgtgaacgctctg
tcgccacgtgacgtagccgttcaggcatacgtgacaactgcggaagccgaccgagattac
ctctcggctgacgatgaagagcagaacaccattggtcaggcaacgacaccaatggacgct
aagggccagatcacaaccgaactcgttgaagttcgacagggtggttctgaggcatacaca
tacgttcaccccgacgaggtcaactacctcgacgtttcgccaatgcagatcgtaagtatt
tcgactgcgttgattccgttcctcgagcacgatgacgctaaccgagctctcatgggttca
aacatgcaacgtcaggctgtaccgctgatcaagccacaggctccactcgttggaactggc
atggaatggcgtgttgctaccgactcaggtcaggtagtgatgtcggaaacagacggtgtc
gtttctgaatctacaagtgactacgtaaagattctcgatgaagccggcgaaactaccgag
tacccactcacaaagttcgttcggtctaaccagggaacttcaatcaaccagcaccctatc
gtccacaagggcgacaaggtcatcaagggctctccactagccgacagttcctcaactgac
aatggtgagcttgctcttggtcagaacctgcttgttggtttcatgacattcgatggcttc
aactatgaagacgcgatcatccttaacgaagacctcgtcaaggacgaccgatacacgtcg
attcacatcgataagcacgaagttgaagcccgagagacgaaactcggaccagaagaaatt
actcgtgacattccaaacgtcggtgaagagagtctgcgtgacctcgacgacgagggaatc
gttcgaattggtgcttgggtaacccccggcgacattctggtcggaaagatcacaccaaag
ggtgaaactgaactaactgctgaagaaaagctcttgcgggccatcttcggtgagaaggca
cgtgacgtaaaagacaccagccttcgagttccacacggtcagcacggcaaggtgatcgac
gtacgtatcctcacaaaggaaaacggcgacgacatgcagcctggtgttaccaagacggtt
cgtgtttgggttgctcacacacgaaagatcaaccagggcgacaagatggctggtcgacac
ggtaacaagggtgttgtggctaaggttctccctcgggaagacatgcccttcctcccagac
ggcacgccgctcgacatcatgttgaacccgatcggtgttccttctcgtatgaacttaggt
cagctgcttgaaacccacttgggttgggctgctaacactcttggtttccacgcacgaacg
cctgtattcgatggcgctcaagacagcgttatcgaagaccaactcgcacgagcttggttc
gttcgtgaatcgaacgccaaagacaagcgagatctggataccgctgaaatcgactggaca
aaggtcgatacttacttagaagagcgcggtttcgaccgtgatcgactctggagtgacgct
cagtcaaaccgtggtgtggctcgagaagcctgcctgcgtatttggctgaatgaagttgcc
ggagtcgaaactaccgacatgaagccttcggagctcatgcaagagtcgctcaaggtatct
cgtgagcgaaacctttctgctccgatcttcggtaagcagatgctcatggatgggcgaacg
ggtcttccatacgacgcaccgattactgtcggtaacgtctacatgctgaagctcattcac
cttgttcaagacaaaattcacgctcgttcaaccggaccttactcgctcatcacccagcag
ccgctcggtggtaaagctcagttcggtggacagcgattcggtgagatggaagtttgggca
cttgaggcatactcggcggcgtatacgttgcaggagatgctgacgattaagtcagacgac
gtgatcggacgtgtcaaaacttacgaagcgatcgtgaagggtgaagaggtcatccagccg
ggtgttcctgaatccttccacgttcttttgaaagaacttcagggtctcggactttcggtc
gagcttctaaacgaagatatcgaacgattcactcaggctcagacgcagtcgcaggaaatg
tcggcaacgcttggtgcaccgctggattggaacgatctaagcgatgagccactcgatgct
ctcgacatcgaagaacttgctgttggtgatgagcctgtggcaattgtcgaagacgattca
gatgatgaagagtcggctggcgctgattcagacgacgacgacgaggcagaagagccaact
gaagattcgcttcagactctcgcttctgaagattctgaagatgtcagcgacgaccttcct
ggcgtcgaagacgaagagaactaa
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