Candidatus Lucifugimonas marina: GKN94_02375
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Entry
GKN94_02375 CDS
T10105
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lmaj Candidatus Lucifugimonas marina
Pathway
lmaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GKN94_02375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmaj03019
]
GKN94_02375
Messenger RNA biogenesis [BR:
lmaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GKN94_02375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WFG34574
LinkDB
All DBs
Position
complement(516651..518324)
Genome browser
AA seq
557 aa
AA seq
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MTSKNNDAPWIRVLPLGGLGEIGKNMMVLETVDDIVVIDAGVLFPEWNMPGIDVVIPDMD
YLEENADRVRALLITHGHEDHIGAVPHFLKRVNVPVYAPAMAEALLHEKLRQARMRDEAE
LKVIHPGEQHEIGELEVEWFAVCHSVPDSTGIAITTPAGVVIHTGDFKLDNAPVIGPPSD
LGVLADICQDGALLLMADSTYAEEEGYSPSDREVVENLPDLIGAAENRVIVSSFASQIAR
IQIVADACIKHGRKLCVLGRSMINNTKIGRDLGHLDIPGDLIISAGEANSLPGDKVLILT
TGSQGEPQSGLVRMSRNDHRDIKIQDDDTIIMSASTIPGNEVPVNDSINELVRLGARVIT
NHERRTHVPGHARKEELRMLLNATRPKYFVPVHGEYRMLKSHADLAVTTGVAPENAFILT
DGDILELDRNSAEVVDRIEAGHIFVHGLGMWDESGNVVIERRSLQHNGVVTVAFSRDTVD
GSLVGRPKIVSAGFVHVEDSDGLLRETEDALTPVLDQHLKKPIEWGDLEDVVRTTVGSFL
GRRTKRRPLIITSAIDV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacatctaaaaacaacgacgcaccatggattcgcgtattaccacttggtggtctcggc
gagatcggcaaaaacatgatggtcctcgagaccgtcgacgacatcgtggtgatcgacgcc
ggtgtgctgttccctgaatggaacatgcccggaatcgacgtggtcattcccgatatggac
tatctggaagagaatgcagatcgcgttcgtgctctgctgatcacccacggtcacgaagat
cacatcggagccgttccgcacttcctaaagcgagtgaacgtacccgtctacgcacctgca
atggcagaagccctgcttcacgaaaaattgagacaggcacgaatgcgtgacgaagccgaa
ctcaaagtgattcaccccggtgaacagcacgaaatcggtgaactcgaagtcgaatggttt
gcagtctgccactcagtccccgattcaactggaatcgcaattacgaccccagccggagtc
gtaattcacacaggtgatttcaaactcgacaacgcccccgtaatcggaccaccatccgac
ctcggcgttttagccgacatctgccaggacggtgcgctgctcctaatggccgactcgacc
tacgcagaagaagagggctactcgccatctgatcgagaagtagtagaaaatcttccagat
ctaatcggggctgccgaaaatcgtgtgatcgtatcgagcttcgcatcgcaaatcgctcga
atacagatcgtcgccgatgcgtgcataaagcacggtcgaaaactctgtgttctcggtcgc
agcatgatcaacaacaccaaaattggtcgtgatcttggccacctcgatattcccggcgac
ctaatcatcagcgctggcgaagcgaacagtcttcccggcgacaaagttttgatcctcacg
acagggtcacaaggtgagccacagtctggactcgttcgcatgtcgcgaaacgatcaccga
gatatcaaaatccaagacgatgacaccatcatcatgtcggcaagcaccattcccggaaac
gaagttccggttaacgactcgatcaacgaactcgttcgactcggtgcccgagtaataacc
aaccacgaacgacgcacgcacgttcccggtcacgcccgcaaagaggagcttcgaatgctt
ctcaatgcaacccgaccaaaatacttcgtgccagttcacggagagtatcgaatgcttaag
tctcacgccgaccttgccgtaacaaccggcgttgctcctgagaacgctttcatccttacg
gatggcgatattcttgagctcgacagaaattcagctgaagtcgtcgaccgcatcgaagcc
ggacacatcttcgtccacggactcggtatgtgggacgaatcgggtaacgtcgttattgaa
cgtcgttcacttcagcacaacggcgtcgtcacagtcgccttctcgcgtgacactgtcgat
ggttcactcgtgggtcgaccaaaaatcgtctcagctggtttcgttcacgtagaggactcc
gacggtctattacgcgaaactgaagacgccctgactcctgtgcttgaccaacatttgaaa
aagccaatagagtggggcgatctcgaagatgttgtacgaaccactgttggaagtttcctc
ggccgccgcaccaaacggcgaccgctgattatcacaagcgccattgacgtctaa
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