Leisingera methylohalidivorans: METH_00990
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Entry
METH_00990 CDS
T02961
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lmd
Leisingera methylohalidivorans
Pathway
lmd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
METH_00990 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmd03021
]
METH_00990 (rpoB)
03400 DNA repair and recombination proteins [BR:
lmd03400
]
METH_00990 (rpoB)
Enzymes [BR:
lmd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
METH_00990 (rpoB)
Transcription machinery [BR:
lmd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
METH_00990 (rpoB)
DNA repair and recombination proteins [BR:
lmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
METH_00990 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AHC99463
UniProt:
V9VP42
LinkDB
All DBs
Position
179023..183156
Genome browser
AA seq
1377 aa
AA seq
DB search
MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDEAEPLDGEGIKGVFQSV
FPIKDFNETSVLEFVKYAFEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQDAIMGAYYNTVQFKLEK
SRGWVTPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTPRAVKKMIEEGTITELLVPFE
HIVGKYVSQDIINEENGAIYVEAGDELTLEYDKDGELIGGSLKELMDAGITDIPVLDIDN
VNVGPYMRNTMAQDKNRTRESALMDIYRVMRPGEPPTVEAASALFDTLFFDGERYDLSAV
GRVKMNMRLALDAEDTQRTLRKEDIVACIKALVDLRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVNEGQVTDEVHYMSATEEMRHTVAQANATLDEGGKFINDLVSTRQSG
DYTLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEKVAIDSGAAIQAKRAGIIDQVDAQRIVIRATSDLELGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGDTVTKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELAILDRNIYARLRGMILGKVAVKGPKGVRAGAEITEEL
LDSLSRGQWWMLALEDEKDAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGIKVDDALQEYRRSGDLTPVRDAMHHAYGDDVYDEGIASMSEAA
LVEAAGNVSRGVPIATPVFDGAKEDDVNDALVRAGFDQSGQSILFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcgttccttggccagaaacgtctacgcaaatactacggcaaaatccgcgaa
gtgctggagatgccgaacctcattgaggtgcagaaatcttcctacgaccttttcctgcgc
tctggcgatgaagccgagccgctggacggcgaaggcatcaaaggtgtgttccagtcggtt
ttcccgattaaggatttcaacgaaacctccgttctggagttcgtgaagtacgcgtttgaa
aagccgaagtacgacgtcgaagagtgcatgcagcgcgacatgacctacagcgcgccgctg
aaggtcaccctgcgcctgatcgtctttgatgtggacgaagacaccggcgccaagtcggtc
aaggatatcaaagaacaggatgtcttcatgggcgacatgcccctgatgaccccgaacggc
acctttgtcgtcaacggcaccgagcgcgtgatcgtgtcccagatgcaccgctcgccgggc
gtcttcttcgaccacgacaaaggcaagacccactcctcgggcaagctgctgtttgcctgc
cgcatcatcccgtaccgcggctcctggctcgacttcgaattcgacgccaaggacatcgtc
tttgcccgtatcgaccgccgccggaaactgccggtgaccaccctgctgtacgccctgggc
ctggaccaggacgccatcatgggcgcctattacaacaccgttcagttcaagcttgaaaag
tcccgcggctgggtcaccccgttcttcccggaacgtgtgcgcggcacccgcccgacctat
gacctggttgacgcggccaccggcgagatcatctgcgaggccggcaagaaagtcaccccg
cgcgccgtcaagaagatgatcgaagaaggcaccatcaccgagcttctggtgccctttgag
catatcgtcggcaaatatgtctcccaggacatcatcaacgaagaaaacggcgcaatctac
gtcgaagccggtgatgagctgaccctggaatacgacaaggacggcgaactgatcggcggc
tctctgaaggagctgatggatgccggcatcaccgatattccggtgctggacatcgacaac
gtcaacgtcggcccctacatgcgcaataccatggcgcaggataagaaccggacccgcgaa
agcgcgctcatggacatctaccgtgtgatgcgcccgggcgagccgcccaccgtcgaggcc
gcgtcggccctgttcgacaccctgttcttcgatggcgagcgttacgacctgtccgcggtt
ggccgtgtgaagatgaacatgcgcctggcgctggacgccgaggacacccagcgcaccctg
cgcaaggaagacatcgtcgcctgtatcaaggcgctggtcgacctgcgggacggccgcggc
gacatcgacgacatcgaccacctcggcaaccgccgggtgcgctcggtcggcgagctgatg
gaaaaccagtaccgtgtcggcctgttgcgcatggagcgcgcgatcaaggaacgtatgtcc
tcggtcgagatcgacaccgtgatgccgcaggatctgatcaacgcgaaaccggcggctgcc
gcggtgcgtgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaaacgccgcctttcggcgcttggccccggcggtctgacccgc
gagcgtgcaggctttgaagtccgcgacgttcacccgacccactatggccggatgtgcccg
attgaaacgcctgaaggcccgaacatcggtctgatcaactcgctggccacttttgcacgc
gtcaacaaatacggcttcatcgaaacgccttaccgcgttgtcaacgaaggccaggtgacc
gacgaagtgcactacatgtcagcgaccgaggaaatgcgccacaccgtggcgcaggccaac
gcgaccctggacgaaggcggcaagttcatcaacgatctggtgtcgacccgtcagtccggc
gactacaccctggcgccgcgcgaaagcgtggacctgatcgacgtcagcccgaaacagctg
gtctcggttgcggcctcgctgatcccgttcctggaaaacgacgacgccaaccgcgctctg
atgggttcgaacatgcagcgtcaggcggttccgcttctgcgggccgaggcgccgctggtc
ggcaccggcatcgaggagaaggttgcgatcgactccggcgcggcgatccaggccaaacgg
gccggcatcatcgaccaggtcgatgcgcagcgtatcgtgatccgggccacctccgatctg
gagctgggcgacgcgggcgttgacatctaccggatgcgcaagttccagcgttccaaccag
aacacctgtatcaaccagcgtccgctggtgaaggtgggcgacactgtgaccaagggcgaa
gtcatcgccgacggtccgtcaaccgatatgggcgaactggctctgggtaaaaacgtggtc
gtcgcgtttatgccgtggaacggctacaactacgaagactcgatcctgatctccgagcgc
atcgcgcgtgacgacgtcttcacctcggttcacattgaggaattcgaagtcgccgcccgc
gacaccaagcttggtccggaagaaatcacccgcgacatccccaacgtcggcgaggaagcc
ctgcgcaacctcgacgaagcgggcatcgtctacatcggtgccgatgtggagccgggcgac
attctggtcggtaagatcacgcccaagggcgaaagcccgatgaccccggaagagaagctc
ttgcgcgccatcttcggcgagaaggcttccgacgtgcgcgacacctcgctgcgcgtgaag
ccgggcgactacggtactgtcgtcgaggtgcgcgtcttcaaccgccacggtgtggaaaaa
gacgagcgtgcgcttcagatcgagcgtgaggaagtcgaacgtctggcccgtgaccgggac
gacgagctggcgatcctggaccgcaacatctatgcgcgactgcgcggcatgatcctgggc
aaagtggctgtcaaaggtccgaaaggcgtccgcgccggtgccgagatcaccgaggaactg
ctggactcgctgtcccgcggccagtggtggatgctggcgctggaagacgagaaggatgcc
caggttgtcgaggccctgaacgagcagtacgaggcgcagaagcgcgccctggacgcccgt
ttcgaggacaaggtcgaaaaagtccgccgcggcgacgacctgccgccgggtgtgatgaag
atggtcaaagtcttcatcgccgtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacggcaacaaaggtgtgatttcgaaagtggtgccgatggaggacatgccgttcctc
gccgacggtacgccggtcgacttctgccttaacccgctgggcgttccgtcgcggatgaac
gtcggtcagatcttggagacccacatgggctgggccgcgcgcggtcttggcatcaaggtg
gacgacgcgcttcaggaataccgccgctccggcgacctgacaccggtccgtgacgcgatg
catcacgcctatggcgacgacgtctatgacgaaggcatcgcctctatgtccgaggccgct
ctggtcgaggccgcaggcaacgtgtcccgcggtgtgccgattgcgaccccggtcttcgac
ggcgccaaggaagacgacgtgaacgacgcgctggtgcgtgcgggctttgaccagtccggc
cagtcgatcctgttcgacggccgcaccggcgagcagttcgcgcgtcccgtaaccgttggc
atcaagtacctgctcaagctgcaccacctggtggacgacaagatccacgcgcgttccacc
ggcccgtacagcctcgtcacccagcaaccgctgggcggtaaggcgcagttcggcggtcag
cgcttcggtgagatggaggtctgggctctggaagcttacggcgccgcctacaccctgcag
gagatgctcaccgtgaaatcggatgacgtcgccggccggaccaaggtctatgagtcgatc
gtcaagggcgaggacaactttgaagcgggcgttccggaatcgttcaacgttctggttaaa
gaagtccgcggcctcggcctgaacatggaactcctggatgcggaagaagagtaa
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