Larus michahellis (yellow-legged gull): 141750307
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Entry
141750307 CDS
T11135
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
lmic Larus michahellis (yellow-legged gull)
Pathway
lmic04510
Focal adhesion
lmic04512
ECM-receptor interaction
lmic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
141750307 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
141750307 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
141750307 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lmic00535
]
141750307 (COL9A3)
Proteoglycans [BR:
lmic00535
]
Extracellular matrix (ECM) proteoglycans
Others
141750307 (COL9A3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
141750307
NCBI-ProteinID:
XP_074461291
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Position
12:3127555..3166078
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AA seq
675 aa
AA seq
DB search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NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggctggattctccgctctcgggcttctcttcctatgtcagctattagccacgacgtca
gctcagagagtaggaccacaaggccctcctggaccacgaggaccccctggaccatctggc
aaggacggcatagatggagagccgggccctcctggcttgccaggcccaacagggccaaaa
ggtgcaccagggaagcctggagcagctggtgaagctggattgcctggcctgcctggggtg
gatggtttaacaggaactgatggcccacctggcccaaatgggcctccaggagaccgtggc
gcgctgggacctgccgggccaccgggaccagctggcaaaggactaccaggacctccgggg
cctccaggacccagtgggctcccaggtggaaatggatttcggggtcctcctggacctttt
ggtctgccaggattcccagggcctcctggaccacccggacctcccggtcttccaggcacc
tttcccgatggcagtgtggaccttcagtgcccagctctgtgcccgccgggtcctccaggt
cccccggggatgccagggttcaagggacacactggtcacaaaggagaacctggtgaaata
ggaaaagaaggagaaaagggcaaccctggccctcccggtcctccaggcatccccggcagc
gttggcctgcagggcccaagaggactaagaggcctccctggtccaatgggtccagctggt
gacagaggtgacatcggtttcagagggccacctggaatgccaggacctccagggaaagcc
ggagagcaaggaaccaaaggacctcaaggattccgggggcccaaaggcgatactggtaga
cctggaccaaaaggaaacccgggggctcgtggactcataggagaacctggcatgcctggc
aaggatggacgagatggagctcctggactcgatggtgagaagggtgatgcggctcgcatg
ggtgctcctggagagaagggaccgaacggactgcctgggctgcctggaagagcaggtctt
aaaggctcaaagggtgaaccaggcagtcctggagagatgggagcggcgggtccctctgga
gagccaggcatccctggcgacgttggtattcctggtgagagaggcctgccgggacccaga
ggagcaactggcccgcttggtcttcagggccccatgggagcccccggtgtcagaggtttc
cagggtcccaaaggtgccagtggtgaacctggccttcctggtccaacgggaattcgtgga
gagttaggtgacaggggtcctactggtgtccctggtcccaaaggtaaccagggcattgct
ggagcagatggcctcccgggtgacaaaggagaactgggtccctttggtccccccggccaa
aaaggagagccaggaaaaagaggagaacttggtccgaaaggtgtgcaaggacctaatggg
acagctggagcaccagggatcccgggacacccagggcccatgggacatcaaggggagcaa
ggtgttcccggcatcacgggcaaaccggggcctcctggcaaagaggccagtgaacaacgt
attagagaactctgtggggaaatgataaatgatcaaattgcccagttagctgctaatctg
cggaagcccttgtctcctggaatgacgggtcgtcctggcccggctggtcccccaggtcct
cctggcgccgtgggaagcgttgggcatccaggtcctcgtggtccccccgggtacagaggg
ccaacaggagaacttggtgaccctggtcccagaggtgacgctggcgaaaagggagataaa
ggacctgttggtcaaggtattgatgggcctgacggtgatcaaggacttcaaggaccaccc
ggtgtacctggaattactaaaaacggtcgggacggtgctcagggtgaacccggtcttcca
ggggatcctggtactcctggtgctattggggctcagggaactccaggaatatgtgacacg
tcggcttgcatgggagctgttggagtatcaacttccaaaaagtcataa
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