Labrus mixtus (cuckoo wrasse): 132978772
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Entry
132978772 CDS
T10666
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
lmix Labrus mixtus (cuckoo wrasse)
Pathway
lmix04510
Focal adhesion
lmix04512
ECM-receptor interaction
lmix04518
Integrin signaling
lmix04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmix00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
132978772 (col6a1)
04518 Integrin signaling
132978772 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
132978772 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
132978772 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lmix04147
]
132978772 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
lmix00536
]
132978772 (col6a1)
Exosome [BR:
lmix04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
132978772 (col6a1)
Glycosaminoglycan binding proteins [BR:
lmix00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
132978772 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
132978772 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
Motif
Other DBs
NCBI-GeneID:
132978772
NCBI-ProteinID:
XP_060900060
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All DBs
Position
8:8490680..8519207
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AA seq
1009 aa
AA seq
DB search
METLRSLLALLCVFVAGAQSQVVRDKFADCPVDLFFVLDTSESVALRQKPPEFYIGQIKA
FTNRFIDELKDMRHRCDRILTWNSGALHYSDDVKMVRELSDMNRDREALKKDILDIEYIG
KGTYTDCAIKRGLAELLVGGSHYHENKYIVVVTDGHPITGYKEPCGGVQEAANEAKQHGV
KVFAVAISPDQEDTRLSLIATDHTYRQNFTAADDSRSTHMGTIRTIIEIITNETKDTCCS
FDCNAKGGPKGPGGDLGSKGETGRPGMPGEKGDVGDIGSVGDPGPVGYSGMKGDRGGRGE
KGERGHKGYKGDKGLRGNDGVDGRKGEAGFPGLAGCKGSPGSDGLQGDSGPKGDPGSYGL
KGGKGDPGRDGEPGRPGNYGPLGPQGDRGPRGADGDKGERGDDGAPGPDGPRGERGQVGE
KGEQGSRGNRGPRGESGEPGSRGDQGREGSAGPNGDPGEPGKSGASGYRGDEGPLGPEGP
KGPRGIKGAPGDRGQMGERGEDGVPGNGTAGCPGFQGYPGSRGDAGEPGSKGTPGPKGDD
GEPGDPGPDNSEPGPAGAKGAKGHRGPEGNPGPSGPPGPPGTDECEILDIIMKLCSCCEC
KCASLDLAFIVDSSESIGSTNFALAKDFIITVVDRLIRDQQVKFAANESKVSVVQYSGSQ
AQEVVQLGSTVNTLTDFKQAVKDLNWLAEATYTGEALDYALKNTVKLMTQENRVVLVLTD
GRSDITRDRIPLNVLCGNNVRVGGLGVKDYTGRNPNQEQLEDVICKNDPKPGFSFVLDNF
AELLDDTFLQNLTENICKDKKCPDYKCPIKFSSGADVFIMMDSSASVGQKNFEMSKTFVR
RLSERFLMAEKDRGATVRVGLGQYSRSARVEQALTANLELLSNKTMEATFQNDGTNMLEA
MELGMKNLRGRGDASGGGKKLVLFSDGRSQDITQSSLDDRVKELSSAGVELFVIAVGSQV
SEANLRTLVSRGRPDDITYAQRHMFRVPDYPSLLRGVFHQTVSRRVSLP
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggagactctcagaagtctcctcgcgcttctgtgcgttttcgtggctggtgcgcaatcg
caggtcgtaagagacaagtttgcggattgtccagttgacctcttcttcgttctggataca
tcggagagtgtggccctcagacagaaacctccagagttctatatcggacagatcaaggca
ttcaccaatcgcttcattgatgaactcaaggacatgcgccatcgctgtgaccgcatcctg
acatggaactcgggagctctgcactacagtgacgatgtgaagatggtgcgcgagctgagc
gacatgaacagagaccgcgaggccctgaagaaggacatccttgacatcgagtacatcggc
aagggcacatacaccgactgtgccatcaagaggggcctggctgagctgcttgtcgggggt
tcacactaccatgagaacaagtacatcgtggtggtgactgatgggcatccaatcactggg
tacaaagagccatgtggaggcgtgcaagaggccgccaacgaagccaaacaacatggagtg
aaagtgttcgctgttgccatctcacctgaccaggaggacaccagactgtccctcatcgca
acagatcatacctacagacagaacttcaccgctgcagacgactctagatccacacacatg
ggaaccatccgaaccatcatcgaaatcatcacaaacgagacgaaagatacgtgttgctct
ttcgactgcaatgctaaaggagggcctaaaggaccaggaggagaccttggctccaaggga
gaaaccggtagaccaggaatgcccggagagaaaggagatgttggtgacataggcagtgtg
ggagatcctggtcctgttggttacagtggaatgaagggagatcgcggtggcagaggagag
aagggtgaaagaggacacaaaggttacaagggagacaaaggtctaagaggaaatgatgga
gttgatggacgcaagggtgaagctggttttcctggactcgccggctgtaaaggatctcct
ggatcagatggtctgcagggagactccggaccaaagggagaccccggctcttatggactg
aaaggaggaaaaggagatcctggaagagacggagaaccaggaaggccaggaaactacggc
ccactgggacctcagggagatcgaggccctcgtggagcggacggggacaaaggagagcgt
ggggatgatggtgcaccagggccagatggacctcgtggggagagagggcaagtcggagag
aagggagagcagggatctcgtggaaacagaggaccaagaggagagtctggggaaccagga
agccgaggagatcaggggagggagggctcagctggccccaacggagaccctggcgagcct
ggcaaatcaggggcttctggctacagaggagacgaaggcccacttggaccagaaggaccc
aaaggaccgagaggaatcaaaggagctccaggagacagaggccagatgggggagagggga
gaagatggtgtaccaggaaacggcactgcaggttgtccaggttttcagggttaccccggg
tctcgtggagacgctggtgagccgggcagtaagggaacccctggacccaaaggagacgac
ggagagcccggagatccaggccctgataacagtgaaccaggacctgcaggagcaaaaggc
gccaaaggtcacagagggcctgagggcaatccgggaccttctgggcctcctggaccacca
ggaactgatgaatgtgaaattctggatatcatcatgaagctctgctcttgttgtgagtgt
aagtgtgcgtctctggacctggccttcattgtggacagctcagagagtatcggctccact
aactttgcactcgccaaagacttcatcatcacagtcgtcgacagactgatcagagaccag
caggtcaagtttgccgccaatgagtccaaggtgagtgtggtccagtacagtggatcccaa
gcgcaggaagtggtccagctgggcagcacggtgaacaccctcaccgacttcaaacaggca
gtgaaagacttgaactggttggctgaggccacttacaccggcgaggctcttgattacgct
ctgaaaaacacggtgaagttgatgacccaggaaaaccgcgtcgttctggttctcaccgac
ggacgctctgatattactagggacaggattcccctgaacgtgctctgtgggaacaacgtc
cgggtgggcggtttaggagttaaagactacacaggccgtaatcccaaccaggagcagctc
gaggacgtgatctgtaaaaatgacccaaaacccggcttttcttttgtcctggacaacttt
gcagagctgctcgatgacactttcctgcagaacctcacagaaaacatctgtaaagataag
aagtgcccggactacaaatgtcccatcaagttctccagcggtgccgatgtcttcatcatg
atggacagctcagccagcgtgggccaaaagaactttgagatgagcaagacgtttgtccgt
cgcttgtccgagcgtttcctgatggccgagaaagacaggggagcgacagtcagggtgggt
ctgggtcagtacagccgaagcgcccgcgttgagcaggccttgaccgccaacctggaactg
ttgtctaataaaaccatggaagctaccttccagaacgacggcaccaacatgttagaggcc
atggagctcgggatgaagaatctacgaggccgtggggacgcatctggaggcgggaagaag
ctggtgctgttttctgatggcaggtctcaggacatcacccagtcctcgttggatgaccgt
gttaaagagttgtcgagcgcaggggtggagctctttgtcatcgccgttggcagccaagtc
agtgaggccaacctgcgcaccctggtgagcaggggccgtccagacgacatcacctacgcc
cagcgccacatgttccgtgtcccagactacccctctctgctccgcggggtcttccaccaa
accgtctcccgcagggtttctttgccctga
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