Listeria monocytogenes N53-1 (serotype 1/2a): BN419_0230
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Entry
BN419_0230 CDS
T02513
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmob
Listeria monocytogenes N53-1 (serotype 1/2a)
Pathway
lmob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BN419_0230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmob03400
]
BN419_0230
Enzymes [BR:
lmob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN419_0230
DNA repair and recombination proteins [BR:
lmob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BN419_0230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
RecG_dom3_C
dATP-dGTP_PPHyd
IstB_IS21
DUF267
Motif
Other DBs
NCBI-ProteinID:
CCQ22652
LinkDB
All DBs
Position
204673..207690
Genome browser
AA seq
1005 aa
AA seq
DB search
MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASVVEGASKRPVVFVTHNL
YHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQRVEALDFLLSGKPGIVIV
PVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTMGYTMSGMVNTPGEFSVRGGI
IDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRVEEFRLLPATEIILDQSYYPDIV
KRLEKKMMLTLNELKEQEDKQALIENLEEDLEMLRSGVKPDMFFKYIGLAYPDPASLFDY
LPKNTAILLDEFGRILETEESLEREEAEWQTETLSRMETVRDVQVSHSFKKLLEGNHSPK
IYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQMNVLKTELESWHKNNYAVVILAPNLERA
EKMQQTLTDYDMESTILKKESDVPKYGMVQFVIGTFQNGFELPLAKVAIISETELFNKKI
KKVKKRQKLSNAERIQSYSELKVGDYVVHVNHGIARYVGMETLDINGVHKDYLLLVYQGE
DKLFIPVDQLDLVQKYVGAEGKSPRLNKLGGAEWKRVKKKVQASVQDIADDLIKLYAERE
AEKGYAFSADDEMQREFEEAFPYQETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTE
VALRAAFKAIMDGKQVAFLVPTTILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETL
KGMKNGTVDVVVGTHRLLSKDVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTA
TPIPRTLHMSMLGVRDLSVIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLY
NRVESITQKADEISAMVPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVD
IPNVNTLFVQDADRMGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEF
TELGSGFKIAMRDLSIRGAGNILGAQQHGFMKQSRRKNQKKNKNK
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaggattacaacaattaatatatgaacaaaaagatattcgggcggtcttaaatgcg
ctggatgaaaaagaaaaagcacaacttgtcacagggctcacaggttcttcgcgcgcatta
tttgcaagcgtggtagaaggtgcgtcaaagcgtccggttgtatttgtcacgcataattta
taccacgcacaaaaattatatgacgatttactttctttaatggatgtcgatcgactgttt
ttatatccagctgatgaattaatttcttctgagttgagtatttctagcccagaacttcgt
ggtcagcgtgtggaagcacttgacttcttgctatccgggaaaccggggattgttatcgtc
ccagtagctgggttaagaaaaatgcttccgccagtatcgctttggaaacatttcaacata
tccattgtagaaggtgaagaaattgatccagatgtactgcgtcaaaaattagttacaatg
ggatacacgatgagtggaatggtaaatactcctggagaattcagtgttcgcggcggaatt
attgatatttatccaattaccgaagagtttccaattagaatagaactttttgacaccgaa
gtggattctcttcgtttctttgatgtggaaacgcagcgctcgacaacacgcgtggaagaa
tttcgcctgctacctgcaactgaaatcattttagatcaaagctattacccggatatcgtc
aagcgcttagaaaagaaaatgatgcttactttaaatgaactaaaagaacaggaagataag
caagcgctcattgaaaatttagaagaagaccttgaaatgcttcgttctggcgtgaaacca
gacatgttctttaaatatatcggtttggcgtatccggacccagcctcgctttttgattat
ttaccaaaaaacacggcaattttgctggatgagtttgggcggattttggaaacagaagaa
agcttggagcgagaagaagcggagtggcaaacggaaacattaagtcgaatggaaacagtt
cgcgacgtgcaagtaagccattctttcaaaaaattattagaaggaaatcactcgccaaaa
atatacctatcacttttccaaaaacaaatggcgagcatgcgcgtttctaaaacaaccaac
atcgtctataaacaaatgcaacaatttcacggtcaaatgaatgtgttaaaaaccgagctg
gaaagttggcataagaacaattatgcggttgttatattagctccaaacttagaacgcgca
gaaaaaatgcaacaaactttgactgactacgatatggaaagcacgattttgaaaaaagaa
tcggatgtgccgaaatatggaatggttcaatttgtcatcggaacgttccagaatggtttt
gaacttccgcttgccaaagtagctattataagtgaaactgaactgttcaataaaaaaatc
aaaaaggtgaagaaaaggcaaaaactctcaaatgcagaacgaattcaaagttattctgag
ttaaaagtaggcgactacgtagttcacgttaaccatggtatcgctcgctatgttggcatg
gaaacgctagatatcaacggcgtgcataaggattatttgctacttgtttaccaaggggag
gataaactatttatccctgttgaccaacttgacttagtccaaaaatatgttggggcagaa
ggtaaatcaccaagattaaacaaactcggcggggctgaatggaaacgagtgaagaaaaaa
gtacaagcttccgtccaagatatcgcagacgatttaatcaaactatacgccgaacgtgaa
gctgaaaaaggctatgcatttagcgcagatgatgaaatgcagcgcgaatttgaagaagct
tttccgtatcaagaaaccgaagatcaactgcgctcaatttcagaaatcaaaaaagatatg
gaacggccgcgcccgatggatcgtctgttggttggagatgttggttacggaaaaaccgaa
gtggctttacgagctgctttcaaagcgattatggatggcaaacaagtcgccttcttagtt
ccaaccactattttagcgcaacaacattttgaaacaatgaaagaacgtttccaaggcttt
ccaatagagattggacttttaagccgttttcgcacgaaaaaacaacaaacagaaacatta
aaaggcatgaaaaacggcacagttgatgttgttgttggtacccatcgtttgctatcaaaa
gatgtggaatatcaagatttaggtttattgattgtcgatgaagagcaacgattcggcgta
actcacaaagaaaaaatcaaacaaatgcgttccaaaatagacgtattaacactgacggcg
acgccaatcccaagaactctacacatgtccatgctcggcgttcgtgacctctctgtcatc
gaaacgccgccagcgaaccgttttccagttcaaacatatgtggctgaacagaataacgtt
ttagttcgagaagcaattgagcgtgaactagcgcgcgatggacaagtttattatttatac
aatcgagtggaatctattacacaaaaagcagatgaaatttctgcgatggttcctgatgct
agggttgccactgcgcacgggcaaatgggcgaatcggaattagaatccgttattttaagt
ttccttgaaggggaattcgatgtgcttgtaacgacgaccatcattgaaaccggcgtagac
attccaaacgttaatacactctttgttcaagatgctgatcggatgggtctttcacaactt
tatcagttgcgcggacgagtaggacgttggaacagaatcgcctacgcttatttcatgtat
caaaaagataaaatattgcgtgaggaagcggagaaacgcttatcggctattaaggaattc
actgaattaggttcaggtttcaaaatagcgatgcgtgacttatctattcgtggtgccggt
aatatcctcggagcacagcaacatggctttatgaagcaatcgaggcgaaaaaaccaaaag
aagaacaaaaacaaatga
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