Listeria monocytogenes 6179 (serotype 1/2a): LM6179_00563
Help
Entry
LM6179_00563 CDS
T03159
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lmoq
Listeria monocytogenes 6179 (serotype 1/2a)
Pathway
lmoq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmoq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LM6179_00563 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmoq03021
]
LM6179_00563 (rpoB)
03400 DNA repair and recombination proteins [BR:
lmoq03400
]
LM6179_00563 (rpoB)
Enzymes [BR:
lmoq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LM6179_00563 (rpoB)
Transcription machinery [BR:
lmoq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LM6179_00563 (rpoB)
DNA repair and recombination proteins [BR:
lmoq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LM6179_00563 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
USB79238
LinkDB
All DBs
Position
2813874..2817428
Genome browser
AA seq
1184 aa
AA seq
DB search
MSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFLDEGLREMFRDISPIED
FAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLINKETGEVKDQEVFMGDFP
LMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKGFGSTVIPNRGAWLEYETDAK
DVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDNDYLRNTLEKDNTDNAEKALLEIY
ERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRYKINKKLHLKNRLFNQTLAETLVDP
ETGEIIASKGDILDRRNLDQIIPNLENGVGFRTLRPTDGVMEDSVLVQSIKIYAPNDEEK
EINIIGNAYIEENVKHITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQ
FRIGLSRMERVVRERMSIQDMTTITPQQLINIRPVVASIKEFFGSSQLSQFMDQTNPLGE
LTHKRRLSALGPGGLTRERAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNK
FGFIETPYRRVDPETNRVTDKIDYLTADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSE
NLAVEKERIDYMDVSPKQVVSVATACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVG
TGMEHVSAKDSGAAVTAKHDGIVEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSN
QGTCYNQRPNVAEGDRVVKGEILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSE
RLVKDDVYTSIHIEEFESEARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDN
DLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGD
ELPPGVNQLVRVYIVQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNP
LGVPSRMNIGQVLELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTILYD
GRSGEAFDNRISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLG
MDVKMLSADEEEIEMRDMDDDDFTNQNDAFNIVQPENAAAEKTE
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaggacattcaggacatgatgtaaaatatggacggcatcgtacgcgtagaagtttt
gcgcgaatcagtgaagtacttgaattaccaaacttaattgagattcaaacagcttcttac
caatggttcttagatgaagggctacgtgagatgttccgcgatatttcgccaattgaggat
tttgcgggtaatttatctttagaattcattgattacgatcttggagagccgaaatattcg
gtagaagaatctaagaaccgtgatgcaaactatgcggctccactgcgcgtgaagttgcgc
ctaatcaacaaagaaaccggcgaagtaaaagaccaagaagtatttatgggtgatttccca
ctaatgactgaaatgggtacgttcattattaatggggcagaacgtgttatcgtttcccag
ttagttcgttctccaggtgtttacttcaatggaaaactagacaaaaatggtaaaaaaggc
tttggttctactgtcatccctaaccgtggggcttggcttgagtatgaaacagatgctaaa
gacgttgtacacgttcgtattgaccgtacacgtaaattaccagtaactgttttacttcgt
gcactaggctttggttccgatcaagaaattattgatttaatcggggacaatgactacttg
cgcaacacgcttgaaaaagacaacactgacaatgctgaaaaagcacttctagaaatttac
gaaagattacgtccgggtgaacccccaacagttgataacgctagaagcttactagtttct
cgtttctttgatccaaaacgctacgatcttgcaagcgttggacgttataaaatcaacaaa
aaattacatctgaaaaaccgtctattcaaccaaacattagcagaaactttagtggatcca
gaaactggtgaaattatcgcttctaaaggtgacatattggatcgtcgtaatttagatcaa
attattcctaatttagaaaacggtgtaggtttccgcacacttcgtccaactgatggagtg
atggaagatagcgtactcgttcaatctattaaaatttacgcaccaaatgatgaagaaaaa
gaaatcaacatcatcggtaacgcgtatatcgaagaaaacgtaaaacacatcacgccttct
gatattatttcatccattagctacttctttaacttgctacatggtgttggcgatacagat
gacatcgatcacctaggtaatcgtcgtcttcgttctgttggtgaacttttacaaaaccaa
ttccgtatcggtttatctcgtatggaacgtgtggttcgtgaacgtatgtctattcaagat
atgactacaattacaccacaacaattgattaatattcgtccagtagttgcatctatcaaa
gaattttttggtagctcgcagttatctcagttcatggatcaaacaaatccacttggcgaa
cttacgcataaacgtcgtctttcagcgcttggacctggtggtttgacgcgtgaacgtgct
ggttatgaagtacgtgacgtgcattactctcactatggccgtatgtgtccgattgaaacg
ccagagggaccaaacattggtttgattaactccctttcttctttcgcaaaagtaaataaa
ttcggctttatcgaaacaccttaccgccgcgtagatcctgaaacaaaccgtgttacagat
aagattgattatctaactgcggatgaagaggataattacgtagtagcgcaagcgaactcg
aaattagacgaacaaggtactttcacagaagaagaagttatggctcgtttccgttcagaa
aacttagcggtagaaaaagaacgtattgactacatggacgtatcgcctaaacaggttgta
tctgttgcgacagcatgtattccgttccttgaaaacgatgatagtaaccgtgcgctaatg
ggagcgaacatgcaacgtcaagcagtacctcttatgcaccctgaagctccatttgttgga
acaggtatggaacacgtatctgcgaaagactctggtgctgctgtaactgccaaacatgac
ggtattgtagaacacgttgaagctcgcgaaatctgggttcgtcgtgtatctctagtggat
ggcaaagaagtaactggcggaattgataaatatacattacgtaaatttgttcgttctaac
caaggtacttgttataaccaacgtccaaacgtagcagaaggtgaccgcgttgttaaagga
gaaatccttggtaacggtccatcaatggattccggtgaacttgctcttggtcgtaacgta
ctagttgcgttcatgacttgggatggttataactacgaggatgcgatcatcatgagtgaa
cgtcttgtaaaagatgacgtttatacttcgattcatattgaagaattcgaatcagaagct
cgtgatacaaaactcggacctgaagaaatgactcgtgatattccaaacgttggggaagat
gctttacgcgaccttgacgaacgtggaattatccgtgttggtgctgaagtaaaagacaac
gaccttctagttggtaaagtaacaccaaaaggagttaccgaattaactgcagaagaacgt
ttattacacgctatctttggtgaaaaagcacgtgaagttcgcgatacttcattacgtgta
cctcatggcggcggcggaatcgtgcttgacgtgaagatctttacacgtgaagcaggcgac
gaactaccacctggtgtaaaccaattagtacgtgtttatattgtacaaaaacgtaaaatc
cacgaaggcgataaaatggccggacgtcacggtaacaaaggggttatctcccgtatttta
cctgaagaagatatgccatttatgccagacggaacacctgttgatatcatgcttaaccca
ctaggggtaccatctcgtatgaatattggacaagtacttgagctacacttaggtatggct
gctcgtgctttaggaattcacgttgcaacaccagtatttgatggtgcgaatgaagaagac
gtttggagcacagtggaagaagctggtatggcccgcgatgcgaaaacaattctttatgac
ggacgttccggtgaagcatttgataaccgtatctctgtaggtgtaatgtacatgatcaag
cttgcccacatggttgatgataaacttcatgcgcgttcaactggaccttactctctagta
acgcaacaaccgcttggtggtaaagcacaatttggtggacaacgttttggtgagatggaa
gtatgggcactggaagcttatggtgctgcttatacacttcaagaaatcctaacgattaaa
tccgatgacgtggttggtcgtgtgaaaacttacgaagcgattgttaaaggcgaaagcgtt
ccagaacctggtgtgccagaatccttcaaagtactcatcaaagagcttcaaagtcttgga
atggatgttaaaatgctttccgcagacgaagaagaaatcgagatgcgtgacatggatgat
gacgactttactaatcaaaatgatgccttcaatatcgtacaaccggaaaatgcagccgct
gaaaagactgagtaa
DBGET
integrated database retrieval system
