Listeria monocytogenes 6179 (serotype 1/2a): LM6179_02712
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Entry
LM6179_02712 CDS
T03159
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lmoq
Listeria monocytogenes 6179 (serotype 1/2a)
Pathway
lmoq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmoq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LM6179_02712
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmoq03019
]
LM6179_02712
03400 DNA repair and recombination proteins [BR:
lmoq03400
]
LM6179_02712
Enzymes [BR:
lmoq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LM6179_02712
Messenger RNA biogenesis [BR:
lmoq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LM6179_02712
DNA repair and recombination proteins [BR:
lmoq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LM6179_02712
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_22
Cas3-like_C_2
NAD_binding_9
Motif
Other DBs
NCBI-ProteinID:
USB78017
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All DBs
Position
complement(1539245..1540648)
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AA seq
467 aa
AA seq
DB search
MNLEKELKEYLGFDEFRPGQKEVIETALAKQNCFAMLPTGTGKTICYQLAGHLMDGLVLI
VSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQILASIHLYKFIFLSPEMLNNETV
KNLLLEQKISLFVIDEAHCISQWGHDFRPDYLMLGRFIQEAKFPVTMVLTATATKKVRAD
ILTQLHLTDCAQIVYSVNRPNISLQVEKFSNQHVKKDRLYELVRKLQTPGIIYFSSKKLA
ESTAHELSEIAELRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYV
IHYHMPADLEAYLQEIGRAGRDGEDSVAILLYANGDEFIQMQLADQDIPDANLMNLTTEQ
RKTLPETEQRFIDYYQRSGLSTKELTDKMDYRKKWKRANLQQFIGYLHTTDCRRNYILRY
FEEAPLEVTPENCCDLDGAEIINFEKRAKIKQKEIPTWEAYLAYLLQ
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
gtgaacttagaaaaggaattaaaagaatatcttggttttgatgagttccgtcctggccaa
aaagaagtaattgaaacggctttagcaaagcaaaattgttttgctatgttacctactgga
acaggaaaaaccatttgttatcaattagcgggtcatttgatggatggattagtattgatt
gtttctccgcttctctcccttatgcaggatcaaatggagcgaatgcgcgctcacggagaa
aagcgagtagcggcgcttaatagctttttaaaacgagaagaaaaaggtcaaatccttgcg
agcatccatttatataaatttatttttttatcgccagaaatgctaaataatgaaacggtg
aaaaacttactattagaacaaaagatcagcttatttgtcatagatgaagcgcattgtatt
tctcagtggggacatgattttcgccctgattatttgatgttaggtaggttcattcaagaa
gccaaatttcctgtcactatggtgcttacggctacggcaacgaagaaagttagagcagat
attttaacgcaactacatctaacggattgtgcgcaaatcgtttattctgttaatcgaccg
aatatttctttacaagtggagaagttttctaaccagcatgtgaaaaaagaccgtttatat
gagcttgttcgcaaactacaaacaccgggaattatttatttttctagtaaaaaattagcg
gaaagcactgcgcatgaattaagcgaaattgctgaattaagagtagcctattatcacggg
gatatggatacagaagatagaattattattcaacaacaatttgtttatgggcaactggat
gtaatttgcgccactagcgcgtttggaatggggatagataaagccgacattcgctatgta
attcattatcatatgcctgctgatttggaagcatatttacaagaaattggtcgagctggt
cgtgatggcgaagacagtgtggcgattctcttatatgcgaatggagatgaattcattcaa
atgcaattagcagatcaagatatcccagatgccaacttaatgaatctgacgactgaacaa
cgcaaaactttacctgaaacagagcaacgttttatcgattactaccaaagaagcggttta
agtacgaaagaattaaccgataaaatggattatcgaaaaaaatggaagcgagctaattta
caacaatttattgggtatctgcatacaacggattgtcgccgtaattatattttacggtat
tttgaagaagccccgttagaagtcaccccagaaaactgttgtgatttggatggagcggaa
ataatcaattttgaaaaaagagcaaaaataaaacaaaaagaaattccaacatgggaagct
tatttagcttatttactgcaatag
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