Limosilactobacillus mucosae: LBLM1_08360
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Entry
LBLM1_08360 CDS
T03814
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lmu
Limosilactobacillus mucosae
Pathway
lmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBLM1_08360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmu03019
]
LBLM1_08360
Messenger RNA biogenesis [BR:
lmu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBLM1_08360
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
Bestrophin-like
KH_KhpA-B
ATP-synt_B
KH_NusA_2nd
KH_2
ArsP_2
Motif
Other DBs
NCBI-ProteinID:
AJT50972
UniProt:
A0A0D4CLD6
LinkDB
All DBs
Position
complement(1780060..1781619)
Genome browser
AA seq
519 aa
AA seq
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MSAFGLFIAALAMVVGIIVGYVIRKVSYEKQIAQAHNSAEGIIAAAKKDAATAKKEAILE
AKEESHRYRESVEQELKKRRDEVQRQEDRMLQRETTLDRKDNALEKRENAVSSREHKLDQ
RNEQIQKSQQQVTQLIEQRQAELEKVAQMSHEDAKELLLKQLQNELKTEREVMIRESEQT
AELAADRKAKQLIVEAIQRSAADTVSEATVSVVALPNDDMKGRIIGREGRNIRTLETLTG
IDLIIDDTPQAVVLSGFDPVRREIAKMALERLIQDGRIHPAKIEEAVEKARRDMDAQLRE
TGEQTVFDLGLHAMHPDLIKTIGRMKYRTSYGQNVLDHSIEVAKLAGIMAAELGEDVTLA
KRAGLLHDIGKAVDHEVDGSHVELGVELTRKYKENPVVINTIASHHGDVPAESVIAVLVQ
AADAVSGARPGARSESLEQYIQRLKKLEEIANRNPGVDHSYAIQAGREVRVIVKPDKITD
LQATALAHDIKREIEGQLEYPGHIKVTVIREVRAVDYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgagtgctttcggcttgtttatcgccgcgctcgctatggttgtcggtattattgtcggc
tatgtaattcgaaaagtctcttatgagaaacaaattgcacaggcgcacaatagcgccgag
ggaattatcgctgctgcgaaaaaagatgctgcgacggccaaaaaagaggctattttagag
gccaaagaagaaagtcacagatatcgggaaagtgtggagcaagagcttaaaaagcgtcgc
gatgaggttcagcgtcaagaagaccggatgctgcagcgcgaaaccacccttgatcgcaag
gataatgcccttgaaaaaagagaaaatgcagtcagttcccgcgaacataaactggatcaa
aggaacgagcagattcaaaaaagtcaacaacaagtaacgcaattgattgaacagcgtcag
gctgaactggaaaaagtagctcagatgtcgcatgaagatgccaaagaactgttgttaaaa
cagctccagaatgagttgaagacggaacgcgaggttatgatccgcgaaagtgagcagact
gctgaactggcagctgacagaaaggctaagcagctgattgttgaagcaattcaacgcagt
gctgctgacacggtttcagaagcgaccgtttccgttgtcgccctgcctaatgacgatatg
aaaggtcgaattattgggcgtgaaggacgtaacattcgaactttggaaactttaaccggg
attgatctgattatcgacgacacgccacaagcggtcgttttgagtggttttgatccggtg
cggcgtgaaattgctaaaatggctttggaacgcttaatccaagatggtcgaattcatcct
gccaagatcgaagaagcagttgaaaaagctcgccgagatatggatgctcagctgcgtgag
actggcgaacagaccgtatttgatctgggactgcatgcgatgcatcctgatctgatcaaa
acgattggtcggatgaaatatcggaccagctatggccaaaatgttttggaccattcaatt
gaggttgccaagctggcaggcattatggctgccgagcttggtgaagacgttaccctagcg
aaacgcgctggtttattacatgatatcggcaaggccgtcgatcatgaggttgatggctca
catgtcgaattgggggtcgagctgactcgcaagtacaaagaaaatccagttgtgattaat
acgattgcctctcaccacggcgacgtaccggccgaatcagtcattgccgtattggttcag
gcggctgatgcagtttcaggtgcgcgtccaggtgctagaagcgagtcgcttgagcaatac
attcaacgactcaaaaaattagaagagattgccaaccgcaatccgggcgttgatcacagc
tatgctattcaagccgggcgggaggttcgcgttattgtcaagccagacaagattacggac
ttgcaggccacggctttggcacatgatattaagcgggagatcgaaggacagctggaatat
cctggccatatcaaggttacggttattcgtgaagtacgcgccgtcgattatgctaaatag
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integrated database retrieval system