Ligilactobacillus murinus: CPS94_00410
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Entry
CPS94_00410 CDS
T07549
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lmur
Ligilactobacillus murinus
Pathway
lmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS94_00410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmur03019
]
CPS94_00410
03009 Ribosome biogenesis [BR:
lmur03009
]
CPS94_00410
Enzymes [BR:
lmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CPS94_00410
Messenger RNA biogenesis [BR:
lmur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CPS94_00410
Ribosome biogenesis [BR:
lmur03009
]
Prokaryotic type
rRNA helicases
CPS94_00410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
AAA_22
NAT10_TcmA_helicase
DUF6677
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWZ37502
UniProt:
A0AAD0L0Q0
LinkDB
All DBs
Position
77365..78861
Genome browser
AA seq
498 aa
AA seq
DB search
MKFDELGLSENLLKAVKRSGFEEATPIQEATIPLVLLGKDVIGQAQTGTGKTAAFGLPIL
EHVDPKEHAIQAIIISPTRELAIQTQEELYRLGKDKRARVQVVYGGADIRRQIKLLKNPP
QILVGTPGRLLDHINRKTVDLSKVKLLVLDEADEMLDMGFLDDIEKIISNVPGQRQTLLF
SATMPKAILRIGEKFMTEPEIVKIKAKELTTDLVDQYFVKARDYEKFDIMTRILDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRMSILKRFKEGKLDILVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGRHGVSVTFVTPNEMDYLRVIERLTKK
RMDPLRPPTEEEAFVGQVSSALDDIKELVAKTQTDKYETQAKELLAEYDAVDLVAALLNN
MTKDDASSVPVKITPERPLPRRKNSSTGKYKRYGSRRNNNKRDRSKNYRDNKKKRRNESR
ERFTKKKSERTFTIRTKD
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttgatgaactcggtctttcagaaaatctgttgaaagctgttaagcgcagtggc
tttgaagaagctactccaattcaagaggcaacgatcccgctggttcttttgggtaaagat
gtgatcggtcaagctcaaacagggactggtaaaacagccgcttttggtttgcctatctta
gagcatgttgatcctaaggaacatgctattcaagcgatcatcatttcaccgacccgtgaa
ttggcgatccaaacgcaagaagaactttatcgcttaggaaaagacaagcgcgcacgtgtt
caagttgtctatggtggtgctgatattcgtcgtcagatcaagctcttgaagaatccacca
caaattttagtgggtaccccagggcgcttattggaccatatcaaccgtaaaaccgttgat
ttgagcaaagttaagttgttagtacttgatgaagccgatgaaatgttagatatgggcttt
ttagatgatatcgaaaagatcatttctaacgtaccaggtcaacggcaaacgttgctattc
tcagcaactatgccaaaagctatcttaaggatcggcgaaaaattcatgaccgaaccagag
atcgtcaagatcaaagctaaagaattgacaactgatctggtcgaccaatactttgttaaa
gcacgtgattacgaaaaatttgatatcatgacccgcattttagatgttcaagccccagaa
ttaacgatcgtctttgggcggacgaaacggcgggtcgatgaattatctaaggggttggaa
gcccgtggttataacgctgctgggatccacggtgacctttcacaacaacgtcgaatgagt
atcctcaagcgcttcaaggaaggcaagttggatatcttagttgcaactgatgtggcggct
cgtggattagatatttcaggggttacacatgtttataattatgatatcccacaagatcca
gaaagttatgtgcatcggatcggacgtacaggacgtgctggacgtcacggtgtttcggtg
acttttgtaacacctaatgaaatggattatttacgtgttatcgagcgcttgaccaagaag
cgaatggatccattgcgtccgccaacagaagaagaagcttttgttggtcaagtttcttca
gctttagacgatatcaaagaactagttgctaagacccaaactgataaatatgaaacccaa
gctaaagaattattggcagaatatgatgcagtcgatctagtcgcagctttactcaataat
atgactaaagatgatgctagttcagttccagtgaagatcacacctgaacgtccattgcca
agacgcaagaatagcagtactggcaagtataaacgctatggtagtcgccgaaacaataac
aagcgtgatcgttccaaaaactatcgggacaataaaaagaaacggcgtaatgagtcgcgg
gaacgctttacaaagaaaaagagcgaacgtacctttacgatcagaacaaaagattaa
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