Ligilactobacillus murinus: CPS94_07150
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Entry
CPS94_07150 CDS
T07549
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lmur
Ligilactobacillus murinus
Pathway
lmur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lmur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPS94_07150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lmur03400
]
CPS94_07150 (mfd)
Enzymes [BR:
lmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPS94_07150 (mfd)
DNA repair and recombination proteins [BR:
lmur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPS94_07150 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
IstB_IS21
DUF3638
AAA_30
RecG_dom3_C
CdvA
Filo_VP35
Motif
Other DBs
NCBI-ProteinID:
AWZ38702
LinkDB
All DBs
Position
complement(1425198..1428737)
Genome browser
AA seq
1179 aa
AA seq
DB search
MKMKLKEAFHSLPEVKEWSQKEAGRHLITGLTGSAKTLFLAELFLENAGPKLIICDDLYR
AQQLADDLENLLDPADVLLFPVEEMLASEMATSSPEFKAQRVLALEALAKQEKKLIVTSM
SGLRRFLPPVELWQKSQLKLVVGQDYELADLVQLLGQMGYTRQKQVERPGDFALRGSILD
IFPLDMSDPLRADFFDTQLDSLRTFDVADQRSLKNIEQVQILPATDLIFDKERLEKAASA
LDEAVKKASTNLSKETKEQLDKNFSAKIDAFLKGELSAKDLSLVEYIYPEKLSLFDYLAT
NGEVFFDDYPRLREKEKQLVQEEQNWIVEQLEKQQLLANAVLGHELSYLEKKLKQPKTFL
AAFPKGMGRMRFVRHLDIKARMVQQFFGQMPLLKAEALRWKESGQTVVLLVGTKERQAKL
QQTLADFGVTSLLGTVADIQTGQVQIALGQLNSGFELPELKLVVLTEQELFAKRSRKQPK
RQTMSNAERLKSYTDLKKGDYIVHVNHGIGRFMGMQTLEVGGKHQDYMTIVYQEDAQLFI
PVSQLDRIQKYVSAEGKTPKINKLGSNKWAKTKSKVAAKIEDIADELVELYAKRESNKGH
AFPPDDSYQREFEAAFPFSETPDQLRSAKEIKADMQKERPMDRLLIGDVGYGKTEVALRA
AFKAIEDGKQVAFLAPTTVLAQQHFETMQARFEGFPVNISVLSRFSTKKQVDETLAKLKS
GECDAVVGTHRLLSKDVKFADLGLLIIDEEQRFGVKHKERLKELKSTVDVLTLTATPIPR
TLNMSMLGVRDLSVIETAPMNRYPIQTYVMEQNYGVIVDGIRREMARGGQVFFLHNRVDD
IEKKVNELQSLVPEAKIAYIHGQMTETQLEGILMDFIAGQYDVLVTTTIIETGVDIPNAN
TLFVENADRMGLAQLYQLRGRVGRSNRVAYAYFMYEPDKVLTEVSEKRLEAIKDFTELGS
GFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYELYTQMLNEAVAKKRGLKPKLHTDCQIDL
SLEAYLPQSYIEDPRQKIELYKRIHQLENKEQYEEIKEDLIDRFGEYPVEVANLLEIGLL
KLYADHALLANITQTSAYKLTLDLAPVGVKKFNAPMMLKALDAAGLDATFETTAKKTAIK
LTLQPAQRAELLAKLQKLCFNLMAEINNIPQIEETVDEK
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaagatgaaactaaaggaagcttttcatagccttccagaagtcaaagaatggtcacaa
aaagaagcaggacgtcatttgatcacagggctgactggctcggccaagacgcttttttta
gctgagttgttcctagaaaatgcaggtccaaagttgatcatatgtgatgacttgtatcga
gcccaacagttagccgatgatcttgaaaacctcttagatccagctgatgtcttgttgttt
ccagtcgaagagatgctagcatcagaaatggcaacgagttcacctgaattcaaagcgcaa
cgtgttttagcactggaagctttagccaagcaggaaaaaaagctgatcgtgacttcgatg
tcagggttacggcgctttttacccccagttgaactttggcaaaagagtcagttaaagttg
gtcgttggccaagactatgaattagcagatctggtgcagttgttaggccaaatgggttat
acgcggcaaaagcaagttgaacggccaggcgactttgcactacgaggatcgatcttagat
atttttcctttagatatgtcagatccgcttcgggccgatttttttgatactcagttagat
tcgttgcggacttttgatgtggccgatcagcgtagtttgaaaaacattgaacaagtgcag
atcttaccagcgactgaccttatttttgataaggaacgtttggaaaaagcagcgtcagct
ttagatgaagctgttaaaaaagcctctactaatttatctaaagaaacaaaagaacaactg
gataagaatttttcagccaagatcgatgcttttttaaagggggaattaagtgccaaagat
ctgagcttagtcgaatacatctatcctgaaaagctaagtttatttgattatttagccaca
aatggtgaagtgttttttgatgattaccctcgtttacgtgaaaaagaaaaacaactagtt
caagaagagcaaaattggatcgttgagcagttggaaaaacagcaattacttgctaatgct
gttttgggacacgaattgagttatttagaaaaaaagctcaagcagcctaaaaccttttta
gccgcctttcctaaagggatgggccggatgcgttttgtgcggcatttagatatcaaagcc
cgcatggtccaacaattctttggtcaaatgccactgctaaaagctgaagcactccggtgg
aaagaaagtggccaaaccgttgtcttgctggtcgggactaaggaacgtcaagcaaagctc
cagcaaacgttagccgattttggggtcacttctttattaggaacagtcgctgacatccag
actgggcaagtgcagatcgctttaggtcagttgaatagtggttttgaattgcctgaatta
aaattagtcgttttgaccgaacaagaactctttgctaaacgttcgcgcaaacagcctaaa
cgccaaacgatgagcaatgcggaacgtttgaagagctatactgacttgaagaaaggcgat
tatatcgttcacgtcaaccatgggatcgggcgtttcatgggaatgcaaactttagaagtc
ggtgggaaacaccaagactatatgacgatcgtttatcaagaggatgcgcaactttttatc
ccagtttcccagctcgatcggatccaaaaatatgtgtcagctgaaggtaagacaccaaag
atcaacaaattaggtagtaacaaatgggccaagaccaagagcaaagttgccgctaagatc
gaagacattgccgatgaactggtcgaattgtatgcaaaacgtgaatctaataagggccat
gcctttccaccagatgatagttatcaacgcgaatttgaagccgcctttcctttttcagaa
acacctgatcagttgcggagcgcaaaagagatcaaagccgatatgcaaaaagaacgcccg
atggatcgtttgttgatcggggatgtgggatatggtaagaccgaagttgctttgcgggca
gcttttaaggcgatcgaagacggaaaacaagttgcatttttagctccgacgaccgttttg
gcacaacagcattttgaaacgatgcaagcgcgctttgaaggttttccagtcaacatcagt
gtcttatcacggtttagcaccaaaaaacaagtcgatgaaactttggctaagctaaaaagt
ggtgaatgcgatgctgttgttgggacccatcgtttgttgtctaaagacgttaaatttgct
gatctaggcttgttgatcattgatgaagaacaacgcttcggggtcaaacataaagagcgg
ttaaaagaactcaaatcaactgttgatgttttgacactaacagctactccgatcccgcgg
acgctaaatatgtcgatgttaggtgtgcgcgatctctcagtgatcgagaccgcaccgatg
aatcgttatccgatccagacctatgtgatggaacaaaattacggggtgatcgtggatggg
atcagacgtgaaatggcacgtggagggcaagtatttttcttgcacaatcgagtcgatgat
attgaaaaaaaggtcaacgagttacagagcttagtgcccgaagctaagatcgcttatatc
cacgggcaaatgacggagactcagttagaagggatcttgatggactttatcgcaggccaa
tacgatgtgttagtgacgacgacgatcatcgaaactggagtcgacatccccaatgccaat
acactatttgtggaaaatgctgatcggatgggcctagctcaactttatcaattacgtggc
cgggtcggacgatcgaatcgtgtggcttatgcctattttatgtacgaacctgataaagtt
ttaacggaagtgagcgaaaaacgccttgaagcgatcaaagattttaccgaattaggttca
ggctttaagatcgcgatgcgtgatctctcgatccgaggggcgggtaacctattagggaag
caacaacatggctttatcgattcggtcggctatgagctgtacacgcagatgttaaatgaa
gctgtcgccaagaaacgtggtcttaagcctaagttgcacactgattgtcagatcgatctg
tcattagaagcttatctaccccaaagttacatcgaagatccacgccaaaagatcgagctt
tataagcggatccaccaattggaaaataaagaacaatatgaagagatcaaagaagacctc
attgatcgtttcggtgaatatccagttgaagtagctaatttactagaaattgggttgttg
aaattatatgctgatcatgcattgttagctaatatcacccaaactagtgcgtataagctc
accttggatcttgcgcctgtaggggtgaaaaaattcaatgcaccgatgatgctcaaagcc
ttggatgcagctggcttagatgcgacctttgaaacgaccgccaaaaagactgctatcaag
ttgaccttgcaaccagcacagcgcgcagaacttttggctaagttacaaaaattatgtttt
aatttaatggctgagatcaacaacataccacagatcgaggagactgtagatgaaaaatga
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