Lagopus muta (rock ptarmigan): 125685232
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Entry
125685232 CDS
T09141
Symbol
TIA1
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
lmut
Lagopus muta (rock ptarmigan)
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125685232 (TIA1)
03041 Spliceosome [BR:
lmut03041
]
125685232 (TIA1)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
125685232 (TIA1)
Spliceosome [BR:
lmut03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
125685232 (TIA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_10
RRM_Nup35
RRM_3
Calcipressin
Nup35_RRM_2
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
125685232
NCBI-ProteinID:
XP_048784098
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All DBs
Position
27:1355816..1367668
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AA seq
372 aa
AA seq
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MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA
SALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR
ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKS
TYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY
SFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETPDMVSPVQQNQIGYPQAYGQWGQW
YGNAQLGQYVPNGWQVPAYGMYGQAWNQQGFNQTQSSAAWMGANYSVQPPQGQNGSVLTN
QAGYRVAGFETQ
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgaaatgcccaagaccctatacgtggggaacctgtccagagatgtgacagaa
gctctgatcctccagctgttcagccagattggaccatgcaaaaactgcaaaatgatcatg
gatacagctggaaatgatccctattgttttgtggagttctatgagcatcgccacgcggct
tcggcactggctgccatgaatggccggaagataatgggtaaggaggtcaaagtgaactgg
gcaacgactcccagcagccagaagaaagacacgagcaaccatttccatgtctttgttgga
gacctcagtcctgaaattacaactgaagatataaaagcagcttttgctccgtttggaaga
atatcagatgcacgggtggttaaggacatggcaacgggcaaatccaaaggctatggcttc
gtctccttcttcaataaatgggatgcagagaatgctattcagcagatgggcggccagtgg
ctcggtggaaggcaaatcagaacaaactgggcaacgagaaaacctccagctccaaagagt
acatacgaatcaaacaccaaacaactgtcttacgatgacgtggtcaatcagtccagcccc
agcaactgcaccgtgtactgtggaggcgtcacttcaggcctgacagagcagttaatgcgc
cagaccttctctccattcgggcagataatggaaatccgagtcttcccagataaaggctac
tcctttgtacggtttaattctcacgagagcgccgcgcacgccatcgtctctgtcaatggg
acgactatcgagggccacgtggtgaagtgctactgggggaaggagacgcctgacatggtc
agcccggtgcagcagaatcaaattggataccctcaggcttacgggcagtgggggcagtgg
tatggcaacgcgcagctggggcagtacgtgcccaacgggtggcaggtccccgcctatggg
atgtatgggcaagcgtggaaccagcagggcttcaatcagacacagtcatcagcagcgtgg
atgggagcaaactacagcgttcagcccccccaggggcagaatggcagcgtgctgacaaac
caggccgggtaccgagtggcaggatttgagacacagtga
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