Lagopus muta (rock ptarmigan): 125689437
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Entry
125689437 CDS
T09141
Symbol
COL9A1
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut04510
Focal adhesion
lmut04512
ECM-receptor interaction
lmut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125689437 (COL9A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125689437 (COL9A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125689437 (COL9A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lmut00535
]
125689437 (COL9A1)
Proteoglycans [BR:
lmut00535
]
Extracellular matrix (ECM) proteoglycans
Others
125689437 (COL9A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125689437
NCBI-ProteinID:
XP_048792501
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Position
2:complement(28066678..28133788)
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AA seq
467 aa
AA seq
DB search
MKSNWKITAFLYMCSFLGSFISATIQQQSRLPVILGARQRTDLCPTIRIGQDDLPGFDLI
SQFQIEKAASQGIVQRVVGSTALQVAYKLGPNVDFRIPTSAIYSNGLPDEYSFLTTFRMT
GATLQKYWTIWQIQDSSGKEQVGVNLNGPMKSVEFSYKGVDGSLQTASFLHLPFLFDSQW
HKLMISVETNRVTLFIDCIKVESLNIKPKGKISVDGFAVLGRLKNNPQISVPFEVQWMLI
HCDPLRPQREGCGELPARISQTVIERGLPGPPGPPGPPGPPGVPGIDGIDGERGPNGPPG
PPGPDGDAGKAGSPGLPGEPGADGLTGPDGSPGATGPKGQKGEPGPPGARGLPGKGLLGP
PGPAGAAGLPGEVGRAGPPGDPGKRGPPGPPGPPGPRGTIGLQDGDPLCPNACPPGRPGH
AGLMGMKGQKGSKGESGEPGKQGYKGEEGDQGPIGEVGAQGPPVKAS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcaactggaaaattacagctttcttgtatatgtgtagttttctggggtctttc
atctcggctaccatccagcagcaatcaaggttgccagtcattctgggtgctcgtcagaga
actgacctctgcccaacaatcaggattggccaagatgacttaccaggctttgacctgatt
tctcagttccagatagaaaaagctgcttctcaaggaattgttcagagagtagtgggctcc
actgctctacaagtggcttataaattgggacccaatgtagacttcaggattccaaccagt
gcaatatattccaatggattgcctgatgaatattcctttcttactacttttcggatgact
ggagccacacttcagaaatactggactatttggcagattcaggattcttcaggaaaagaa
caagttggagtgaatctcaacggtccaatgaaaagtgttgagttttcttataaaggagtg
gatggaagtctccagactgcatcatttttacatttgcctttcttgtttgattcccaatgg
cacaagcttatgataagtgtggaaacaaacagggttacactttttattgactgtataaaa
gtagaatccctaaacataaaaccaaaggggaaaatcagtgttgatggcttcgctgtgctt
ggaagactcaaaaataatcctcaaatttcagttccgtttgaagtccagtggatgctgatt
cactgcgatcccctgcggccccagagagaaggctgtggtgagctcccagcccggataagc
cagacagtgattgagagagggctccctggtccaccaggccccccaggtccaccagggcca
ccaggagttcctggcattgatggcattgatggagaaagaggacctaatggccccccaggt
ccaccgggtccagacggggacgcaggcaaagcaggatccccaggcctgcctggagagccg
ggagctgatgggttaacaggtcctgatggatcaccaggtgccacaggaccaaaaggacag
aagggtgagccaggacctccaggtgctcgtggacttccgggcaagggtcttcttggacca
cctggtcccgctggtgctgcaggactgcctggtgaagtaggccgtgctggcccacctgga
gatccaggaaaaagggggccaccaggaccaccgggacctccgggccctcgaggaacaatt
ggtctgcaagatggtgacccattgtgtcccaatgcttgtccacctggccgcccaggacat
gctggcctaatgggaatgaagggacagaaaggctcaaaaggagaatctggtgaaccagga
aaacaaggttacaagggtgaagaaggggatcaaggacccattggtgaagttggagctcaa
ggccctccagtaaaggcatcctag
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