Lagopus muta (rock ptarmigan): 125692707
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Entry
125692707 CDS
T09141
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125692707 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lmut03021
]
125692707 (POLR1A)
Enzymes [BR:
lmut01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125692707 (POLR1A)
Transcription machinery [BR:
lmut03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125692707 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Pox_C7_F8A
Motif
Other DBs
NCBI-GeneID:
125692707
NCBI-ProteinID:
XP_048799546
LinkDB
All DBs
Position
4:complement(65602779..65633388)
Genome browser
AA seq
1711 aa
AA seq
DB search
MRPPKVVPWWRFAKVSFGLYTAEEIRKLSVKAITNPQYLDNVGNPSVNGLYDLALGPPDS
KEACATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCTRAVVHLL
LSQLKVLEHGLLHAVHDLEVILNRFLEQSADATALEIEEELNRHVDEILQSQELSDQCSN
VKNVCECRNKLISQFWKAHMTSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVFHKAGEEGV
VDEPVAIDETQLGKRGYLTPMTAKEFVLALWKNEGFFLRYLFPGMDPHKDSAFSPDMFFL
DLLVVPPSRYRPVNRVGDRMFTNGQTVNLQAVMKDATLIRKLLVFMAKEQCQPIKIVEDK
IQTETGESDEPLDRSVLATIPGQTIADKLYNAWIRLQTHVNIVFDSDMDKLMTEKYPGIR
QLLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVK
ELRQAVINGPKVHPGASMVINEDGSRTVLSASSLTQREAIAKQLLTPSSGAPQSGLKIVC
RHIKSGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP
QNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTTRGCFFTREQYMELVYR
GLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENYVPLNLTGKAKIGGKAWMKG
PASRCLNLDSMCESQVIIRGGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLTCL
GRLFTAFLQLYRGFTMGIEDILVKPEADRKRHKIIRKSNQCGIEVVRAALNLPETASCED
VQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSG
AKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKP
SEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGE
DGLDIPKTQFLQPEQFPFIADNYEVIQKTNHLNEALARMEMHQAKQQFKAIRKWWARHQN
PVQREGGFLLFSQKKMASVKRQISGGESKNGRDPATLQLLKMWYELDEKKRRKYLKKANK
CPDPSLAVWRPDSYFASVSETFENGVEDYINKRECEKGGGCMQPALSSDRLKDLLYLKWQ
RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT
PMMSVPVLSTKKAHKKVKQLKKQLTRVCLAEVLQKVELEESLHLKNKENSHRLYKIKFCF
LPHEYYGEEKCVKPRDILHFMETRFFKIFLEAIKRKRAKMSSFTEVSTRKATRRDVEDVG
DKAQNNQEAPEGEEEEKIVDAEPDEGDGDATEAKMRRNQEEEVDYESEEENGEENAAENP
EDEEGESEKEERAQDADEEDQNGADGDDSPHLSFMSQTKKERAQLLKSAEVRVNAVLNSH
PSIQDYTFDTENELWCEVSLTLPLMKVYFDISSLLLSLTRNTVIHEVKGITRCLLNESTN
EKGEKELILHTEGINLAELFRYADILDLNRLYSNDIHAMAKNYGIESALRVLIKEIKDVF
AVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGA
YDELRSPSACLVLGKVVKGGTGLFDLKQPLT
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgccgaaagtggtgccttggtggcggttcgccaaggtctccttcgggttgtac
accgccgaggagatcaggaaactgagcgtaaaagccataacgaatcctcagtatttggat
aacgtggggaatccttctgttaatggattgtacgacctggctctgggacctcctgattcc
aaagaagcatgtgcaacgtgcatgcagaacttcagcaactgcccagggcactttggccat
atagaactgcctctgactgtctacaaccctctgttttttgataaactataccttctaatt
cgaggttcttgtttaaattgtcacatgctgacatgtactcgagctgtggttcatttgctg
ctaagtcagctgaaggttctggagcatgggttgcttcatgctgtgcatgatcttgaagtc
atcttaaacaggtttttagagcaaagtgcagatgcgacagctctagaaattgaagaagaa
ttaaatcgccatgttgatgaaatattgcaaagtcaagaactgagtgatcagtgttcaaat
gtaaaaaatgtttgtgagtgtagaaataaattgatatcccagttctggaaagcacatatg
acttcaaagaaatgcccaaactgcaaatcaaggagatcactggtgcggaaagagcataac
agcaagctgacagtaacttatccttctacagtgtttcataaggcaggagaggaaggtgtt
gtggatgaaccagtagctattgatgaaactcagttagggaagagaggatacctgacacca
atgactgccaaggagttcgtcttggctctgtggaagaatgaaggtttctttctgcgttac
cttttccctgggatggatccccataaggactcagctttcagcccggatatgtttttctta
gatctgcttgtggttcctccttcaaggtatcgtcctgtaaatcgtgttggagaccggatg
tttacaaatggtcagactgtgaacctgcaggctgtcatgaaagatgccaccctgatcagg
aagctcttggttttcatggcaaaagaacaatgccagccaattaaaattgtagaagacaaa
attcaaacagagacaggggagagtgatgagcctctggaccgttctgtgctggcaacgatt
ccaggacagaccattgcagacaagctttataacgcttggattcgtcttcagacccacgtc
aacattgtgtttgacagtgacatggacaaactaatgactgagaaataccctggtattcgt
cagctattagagaaaaaggaaggactgttccgcaagcacatgatggggaaacgtgtggat
tttgcagctcggtcggtcatttgccctgatatgtacattggtaccaatgagattggcatt
cccatggtatttgctaccaaactgacctaccctcagccagtcactccctggaatgtcaaa
gaactgaggcaggctgtcataaatggcccaaaggttcaccctggggcttccatggtcatt
aatgaggatgggtctcgtacggtgctgagtgcaagcagcttgacccagagagaagccata
gccaagcagctcctcacgccttcttcaggtgcaccccagtcaggactgaagattgtttgc
cgtcatattaaaagtggagatgtcctgttactgaaccgccagcccactcttcatagaccc
tccatccaagctcaccgggccagaatcctgcctggagagaaggtgctgaggctccactat
gccaactgcaaggcatacaatgctgattttgatggtgatgaaatgaatgcccatttccca
cagaatgagctgggtagagcagaggcctacaccttagcctttactgatgaacagtatcta
gttccaaaggatggcaaaccacttcctgggttgatccaggaccacatgatttctggagtc
agcatgacaacccggggctgctttttcacaagagagcaatatatggagcttgtttatcga
ggactaacagacaagaaaggaagaattaaaacctttcctcctgccattatgaaaccacag
cgattatggacagggaagcaggttgtttctacattgttaataaatatcatcccagaaaac
tacgtcccactgaatttgactgggaaagctaagataggtgggaaagcctggatgaaggga
cctgcaagcagatgtctaaatcttgactcaatgtgtgaatctcaggttattattagaggt
ggggaattactttgcggtgtgctggacaaagcccattttggcagctctgcctatggccta
gtccactgctgctatgaaatttatgggggtgaaaccagtggaaaagtgctgacgtgtctg
ggacgcctctttactgcttttctgcagctctacagggggtttacaatggggattgaagat
atcttggttaaacctgaagcagaccgcaaaagacacaaaatcatcagaaaatcaaaccag
tgtggtattgaagttgttagagcagctcttaatttgccagaaacagcatcatgtgaagat
gtacaagggaaatggcaggatgcccatctctgcaaagaccagagagattttaacatggtt
gacctgaaattcaaggaggaagtaaacaattacaacaatgaagttaacaaggtttgcatg
ccatttggtctgcataggagctttccagagaacaatttgcaattgatggtacagtcagga
gccaaaggatccactgtaaatacagtacagatttcttgtttgctgggccagatcgagttg
gaaggtcgaaggcccccgctgatggcatctggcaaatctctgccgtgtttccaaccttat
gatttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcaaacct
tctgaattcttctttcactgcatggctggcagggaaggtcttgtggatacagctgtcaaa
accagccgttctgggtacctgcagaggtgtatcataaagcatttggaagggctggtggtt
cagtatgacctgactgtacgggacagcgatggcagcgtggtgcaatttctgtatggagaa
gatgggcttgatatccctaaaactcaattcttacaacccgagcagtttcctttcattgct
gataactatgaggtgatccagaagacaaatcatctgaacgaagccttagcaaggatggag
atgcaccaagcgaagcagcagtttaaagccatcagaaagtggtgggccaggcaccaaaac
cctgtgcagagagaaggaggttttctgttgttttctcaaaagaaaatggcgagtgtaaag
agacaaatctcaggaggagaaagcaaaaatggaagagatcctgctactttacagttattg
aagatgtggtatgaactagatgagaagaaacgaagaaagtatctaaagaaggcaaataag
tgtcctgacccaagtctcgctgtttggcgtccagattcctactttgcatctgtttcagaa
acatttgaaaatggagtcgaagattatatcaacaaacgagaatgtgagaagggaggaggt
tgcatgcaaccagcactttcttctgatagattaaaggatttgttatatttgaagtggcaa
cggtctctttgtgacccaggagaagctgtgggtcttcttgcagctcagagtattggggag
ccttccacacagatgactctgaacaccttccattttgctggcagaggtgaaatgaatgtc
acgttgggtattccaaggttgcgggagatcttgatggtagccagtgcaaatattaaaacg
ccaatgatgagtgttcctgtgctcagtaccaagaaagctcacaagaaggtgaaacagctc
aagaaacagctcacaagagtgtgcttagctgaggtattgcagaaagttgagttagaggaa
tccttgcacttaaagaacaaagagaacagccatcgcctctacaaaatcaaattctgcttc
ttgccccatgaatattacggagaggagaagtgtgtgaagcccagggacatcttgcacttc
atggaaacaaggttctttaaaattttcttagaagccattaaaaggaagcgtgcaaagatg
tcatcttttactgaagtcagtacccgcaaagcgactcgtagagatgtggaagatgttgga
gacaaggcacaaaataatcaagaagctccagaaggtgaggaagaagaaaagattgttgat
gcagaacctgatgaaggggatggtgatgctacagaagcaaaaatgaggaggaaccaggaa
gaagaggttgattatgagagtgaagaagagaatggggaagaaaatgctgctgagaatccc
gaagatgaagagggtgaatcagaaaaggaagagagggcccaagatgctgatgaagaagat
caaaacggagcagatggtgatgattctccacatctttcctttatgtctcagactaaaaaa
gagagagctcaattacttaagtcagcagaggtgcgagtaaatgcagttctgaacagtcac
ccatctatacaggactacacgtttgacactgaaaatgaactttggtgtgaggtttcgttg
actcttccattgatgaaggtgtactttgatatctcctctttgcttctttctctcacacga
aacacagtcatacatgaagtgaaggggatcacacgatgcctgttgaatgaaagtaccaat
gagaaaggagagaaagaactcattctgcacactgaagggataaatcttgcagagctgttc
agatacgctgatattttggacctgaacagactttactccaatgatattcatgccatggct
aagaattatggtattgagtctgccctgagggtccttataaaggaaataaaagatgtattt
gctgtctatggcattgtggtagaccctcggcacctctcacttgtggcagactacatgtgt
tttgaaggagtttataaacccatgaatcgttttggaatccagtccagctcctcccctctg
caacaaatgacatttgaaaccagttacaaattcctgaaggaagcaacgatgatgggtgcc
tatgatgaactgagatccccttctgcttgcctggtgcttggaaaagttgttaaaggaggg
actggtttgtttgacctcaagcaaccccttacatag
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integrated database retrieval system
