Lagopus muta (rock ptarmigan): 125699123
Help
Entry
125699123 CDS
T09141
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lmut
Lagopus muta (rock ptarmigan)
Pathway
lmut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lmut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125699123 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lmut03019
]
125699123 (CNOT1)
Messenger RNA biogenesis [BR:
lmut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125699123 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125699123 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
125699123
NCBI-ProteinID:
XP_048814269
LinkDB
All DBs
Position
12:complement(17932729..17986590)
Genome browser
AA seq
2377 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCTSVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVTTDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLSQPTFQQSKMKPSDLSQVWPEANQNF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCMTEL
EQHLQSIPHTLAMNPQAQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHE
VRQGEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcacattgtgaacaggcacggt
cccgaggcagacaggcacttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctacgccattgacaatccgttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ctaagtaaagttcaagaggtgatatttggtctcgctttactgaactcgttcagctcagat
ctacgaggttttgctgcccagtttatcaaacagaaactcccagatcttttacgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctttttgggcagaagggagcatttggggtgggacag
gagcagatcgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaacaatgatggagagttctctggcagactttatgcaa
gaagttggctatggcttttgtacaagcgttgaagaatgtcgcaacataatcatgcagttt
ggagttcgggaggtgacggctgcccaggttgccagggtgctggggatgatggctcggact
cattcggggctgacggatggtattccattacaatctatttcggctcctggcagtgggatt
tggagtgatgggaaagataaaagtgatggagcacaagcccatacctggaatgtggaggtc
ttaattgatgttcttaaggagctgaatcctagcctggacttcaaagtagtaacctatgaa
ttggaccacccaggatttcagattcgtgacagcaaaggcctgcatattgtggtgtttggc
atccagagagggctgggcatggaagtttttccagttaatgccatatacagaccttggaag
catgcagaaggccagctctctttcattcaacattccctcataaacccggacatcttttgt
tttgctgactacccttgtcatacagttaccacagacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgatcgaatctctgttacggctg
gcagaagtgggacagtatgagcaggttaagcagctcttcagttttcccatcaagcattgc
ccagatatgttggtgttggccttactgcagatcaacacttcctggcataccttgcgccat
gaactcatctccacgctcatgccaatcttccttggcaaccatcccaactctgccatcatt
ttgcactatgcgtggcatgggcagggtcagtctccttcgattcgccagcttatcatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtcacgtatt
cttgatgtggcacaagacttgaaggccttgtcaatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgagaatacctcaaacttgacaaatgg
ctcacagacaaaattcgggagcatggggagcccttcatccaagcctgcatgaccttctta
aagagaagatgtccatccatcctgggcggcctggctcctgagaaagatcaacccaaaagt
gctcagcttcctccagaaaccttggcaactatgttggcatgcctgcaggcttgtgctggg
agtgtttctcaggagctgtcagagaccatcctcaccatggtggccaactgcagtaacgtc
atgaataaggccaggcagccaccgcctggagtcatgcccaaaggccgcccacccagcgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcatctctg
agtttaggtggctcagctgctcctcacacccagagcatgcaaggcttccctccaaacctg
ggctctgcgttcagtactcctcagtcaccagcaaaagcatttccccctctttccacgcaa
aaccagacaacgggtttcagtggcattggaggactctcttcacagcttccagtaggaggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtgcaaaggaagctgagcacatctggactgagccagcctacgttccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagaacttc
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatctacaaccatccacca
catccaaccatgtctgtagatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaaagagaagtgtttaactgcatgctgaggaacttgtttgaggaatatcgt
ttctttccccagtaccctgacaaagagctgcacataacagcctgcctgtttggtgggata
atagagaaaggactggttacctacatggctttgggcctggcccttcgctacgttcttgaa
gccttacgaaagccttttgcctccaaaatgtactattttggtattgctgcactagataga
tttaaaaataggttgaaggactatcctcagtattgtcagcacttggcttctattagtcac
tttatacagttccctcatcacttgcaggagtacatagaatatggacagcagtctagagat
cctcctgtgaaaatgcagggctcaatcaccacccctggaagcattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctcctcttgctggccaagtcagcactatagta
accacctcaaccaccaccactgttgcaaaaaccatcaccatcactcgaccaacaggagtc
agcttcaagaaggacgtgccgccttccattaataccaccaacattgatacgctgttagtt
gcaacagatcaaactgagagaattgtggaacctccagaaaatgtccaggaaaaaattgct
ttcatcttcaataatctgtcccagtcaaacatgacacagaaggttgaagaactgaaggaa
acagtgaaagaagagttcatgccttgggtatcgcagtatctcgtgatgaagcgagtcagt
attgagccaaattttcacagcttatattcaaacttccttgacactcttaagaatccagaa
tttaataaaatggttctgaatgaaacttacagaaatatcaaggtgctgctgacatcagat
aaggctgcagccaacttctccgaccgttccttgttaaagaaccttggtcactggctggga
atgattacactggctaaaaataagcccatcctgcacacggatttggatgtgaagtctcta
ctactggaagcgtatgttaagggacagcaggaattgctttatgtagtaccatttgttgcc
aaagtcttagaatccagtgtcaggagtgtggtcttcaggcctccaaacccatggacaatg
gccattatgaatgttttagctgagctgcatcaagaacatgatctaaaattgaatctgaag
tttgagatcgaagtgctctgcaagaatcttgcactggacatcaatgagctgaaacctgga
aatctcctgaaagataaggatcgtctgaaaaatctggatgagcagctgtctgctccaaag
aaagatgtgaagcagccagaagagctaccacccatcaccaccaccactgcttctacaact
ccagctaccagcaccacttgtacagccacagttcctccgcagccccagtacagttatcat
gacatcaatgtctattcgttgggagggttggctccacatatcaccttgaatccaacaatc
ccgctgttccaggcccacccccagctgaagcagtgcgtgcggcaggctatagagcgagcg
gtgcaggagctggtgcatcccgtggtggatcggtccattaagattgccatgactacgtgt
gagcagattgtcaggaaggactttgcgctggattctgaggagtcacgaatgcgtgtggct
gcacaccacatgatgaggaacctgactgctgggatggccatgatcacctgcagggagcct
ttgctcatgagcatagctaccaacctgaagaacagttttgctactgcactgagggcagcc
tccccacaacagagggacatgatggagcaagcagctgcccagctggcacaggataactgt
gagctggcatgctgctttatccagaagacagctgtggaaaaagcaggccctgaaatggac
aagaggctggcgactgaatttgagctcagaaaacacgctaggcaggagggtcgtcggtac
tgtgatcctgttgtgctaacttaccaagctgaacggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgaagagtttgcacgtaacgtcccc
ggcttcttgcctaccaatgacttaactcagcctacaggattcttggctcaacctatgaag
cagcaagcttgggccaccgatgatgtagcacaaatctatgacaaatgcatgacagaactg
gagcagcacctgcagtccattccccatactctggccatgaatcctcaagctcaagcgttg
cgcagcctcctggaggctgtggtggttgctcggaactcccgtgatgccatcgctgcgctc
ggactgctgcagaaggctgtagagggcttactggatgccaccagtggggcagatgctgac
ctcctgcttcgctaccgtgagtgtcacctgctggtgctgaaggctctgcaggacggccgt
gcgtatggatctccgtggtgtaacaagcagattactaggtgcctgattgaatgtagagat
gagtacaagtacaacgtggaagctgtggagctgctgatccgcaatcacctggttaacatg
cagcagtatgatcttcacctggctcagtcgatggagaacggcttgaactacatggctgtg
gcatttgccatgcagttggtgaagatcctccttgtggatgagagaagtgttgcccatgta
acggaggcagatctgttccacaccatcgagacgctcatgaggatcaatgctcattccaga
gggaatgccccagaagggttaccccagttgatggaagtggtccgatcaaactacgaagcg
atgatcgaccgtgctcatggaggtcccaatttcatgatgcattctggaatttcccaagcc
tcagaatatgatgatccaccaggtctgagggagaaggcagaatacctgctgagggagtgg
gtgaacctctaccattcggctgcagcgggccgcgacagcaccaaagcgttctctgcgttt
gttggacagatgcaccagcaaggcatcctgaaaacagacgacctgatcacccgctttttc
cggctttgcactgaaatgtgtgttgaaatcagctatcgtgctcaggctgagcagcagcac
aaccctgctgccaaccccaccatgatccgagccaagtgctaccacaatctggatgccttt
gtgcggctcattgcactgctggtgaagcactccggggaagccaccaacaccgtgacgaag
atcaacctcctgaacaaggttcttggtattgtggtgggagttcttctgcaagaccatgag
gttcggcagggtgagtttcagcagctcccttaccatcgcattttcatcatgttgctgttg
gaattaaatgctcctgagcacgtgttggagaccatcaacttccagacgctcacagccttc
tgtaacacatttcacatcctgaggcctacaaaagctccaggttttgtttatgcctggctg
gaactgatctcccatcggatatttattgcaagaatgctggcacatacaccacagcagaag
ggttggcctatgtatgcccagctactgatcgatcttttcaagtacctggctccttttctc
agaaatgtggaactcaccaaacctatgcaaattctgtacaagggcactctgcgtgtgctg
ctggtcttgttgcatgatttcccagaatttctttgtgactaccattatgggttctgcgat
gtcatcccacctaactgtattcagctaaggaatttgatcctgagtgccttcccacggaac
atgaggcttccagaccctttcacccccaatctaaaggtggacatgttgagtgaaattaac
atcgctccacgaatcctcaccaatttcactggcgtgatgccacctcagttcaagaaagac
ttggattcctatctcaaaacccgttctccagtcacttttttgtctgacttgcgcagcaac
ttacaagtatcaaatgaacctggcaaccgctacaacatccagctgattaatgccctggtg
ctctacgtgggcactcaggccattgcgcacatccacaacaaaggcagcacgccctccatg
agcaccattacccactcagcacacatggacatcttccagaatttggcagtggacctggac
accgaaggtcggtacctcttcctgaatgcaattgccaatcagctgcgataccccaacagt
catacccactacttcagctgcaccatgctttacctgtttgcagaggccaacactgaagct
atccaggagcagatcaccagggttctcttggaacgactgattgtaaataggcctcatccc
tggggtctcctcatcactttcatcgagctgataaaaaacccagcatttaagttctggaac
catgaatttgttcactgcgctccagaaattgagaagttgttccagtcggttgcacagtgc
tgcatggggcagaagcaagcccagcaagtaatggaggggactggtgccagttag
DBGET
integrated database retrieval system
