KEGG   Liquorilactobacillus nagelii: BSQ50_01230
Entry
BSQ50_01230       CDS       T06235                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
lng  Liquorilactobacillus nagelii
Pathway
lng03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BSQ50_01230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lng03021]
    BSQ50_01230
   03400 DNA repair and recombination proteins [BR:lng03400]
    BSQ50_01230
Enzymes [BR:lng01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BSQ50_01230
Transcription machinery [BR:lng03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BSQ50_01230
DNA repair and recombination proteins [BR:lng03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BSQ50_01230
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 Halo_prof
Other DBs
NCBI-ProteinID: AUJ31301
UniProt: A0A3Q8CB60
LinkDB
Position
276845..280444
AA seq 1199 aa
MAGHIVKYGKHRTRRSYARIKEVLELPNLIEIQTNSYKWFLNDGLREVFEDIMPIEDFAG
NLSLKFVDYQLLKPKYTVEEARQHDANFSAPLHVTLNLINHETGEIKSQDVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYYNSEMDKSGRVTYGTTVIPNRGAWLEYENDAKNIA
YVRIDRTRKIPLTELIRALGFSSDDEIVKMLGASDSLLLTLEKDVHKVSEDSRVEESLKD
IYERLRPGEPKTADSARSLLTARFFDPKRYDLAPVGRYKINKKLDLKNRLLNLTLAETLA
DPETGEILAKKDTVLDKQVLDNLAPFLARKDFKTYTFQPSDEGVVTNPMIVQIIKVYSPK
DPEKIVNMIGNGNIDLKYKHILPADIIASMNYFFNLQEDIGNTDDIDHLGNRRIRCVGEL
LENQFRIGLSRMERVVRERMSIQDTATVTPQQLINIRPVVASIKEFFGSSQLSQFMDQTN
PLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYA
RINQYGFIETPYRRVSWTTHKVTDKIDYLTADEEDNYVIAQANSPLNDDGSFVNNVVMAR
SKSDNIEISVDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLIDPHA
PLVGTGIEYKAAHDSGVALISKHDGTVEYVDAREIRVRRDDGTLDRYKLMKFRRSNGGKN
YNQRPIVQVGDHVDNDEVLADGPSMENGELALGQNPLIAFMTWDGYNFEDAIAINERLVK
EDVYTSIHIEEHESEARDTKLGPEEMTREIPNVGEDALKDLDEFGIIRIGAEVHDGDILV
GKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVQDVKIFTREAGDELSP
GVNMMVRVYIAQKRKIQVGDKMAGRHGNKGTVSIVIPEEDMPFMPDGTPVDIMLSPMGVP
SRMNIGQVLELHLGMAGRKLGIHIASPVFDGARDSDIWSALKEAGVSSDGKSVLYDGRTG
EPFDNRIAVGVMYYMKLAHMVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWAL
EAYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMK
VLDSDKKEIELRDMDDEDDEVMNVDALSKLAKQQAEKKAQAEADSPATEMTDTEAKTEN
NT seq 3600 nt   +upstreamnt  +downstreamnt
ttggcaggacatatagttaaatacggtaaacatcgaactcgtagaagttatgcacgtatc
aaagaagttctggaactgcctaatttgatcgaaattcaaactaattcatataaatggttt
ttgaatgacggtcttagagaggttttcgaggatattatgccgattgaggattttgcaggc
aatttatctttgaagttcgttgattatcaattgttgaaaccaaaatacacagtcgaggaa
gcacgacagcatgatgctaatttttcggcaccactgcacgttacgttgaatttaataaac
catgaaaccggagaaattaaatctcaggatgttttctttggcgacttcccactaatgact
gaacagggtactttcattataaatggtgctgaacgagttatcgtttcacaattagttcgt
tcacctggagtttattacaattctgaaatggataaaagtggtcgagttacctatggaacg
acagtaattcctaatcgaggagcttggctagaatatgagaatgatgctaaaaatattgca
tatgtcagaatcgatcgaacgcgtaaaattccgttaactgaattaatcagagcgttaggt
tttagttctgatgatgaaattgtcaaaatgcttggtgccagcgacagcttacttttgact
cttgaaaaagacgtgcataaggtcagcgaagattcacgtgtcgaggagtcgctgaaagat
atttatgaacgactacgcccaggtgagcctaaaacggctgatagtgcccgtagtttgtta
actgctcgtttctttgatccgaaacgttatgacttagcgccagttggacgctacaaaatc
aacaagaagttagatttgaagaatcggttactcaatctaactttggcagaaacgttggcc
gatccagaaactggagaaatcttagctaagaaggatactgttttagataaacaagtcctg
gataacttggctccgtttttagcaagaaaagattttaaaacttatactttccaaccttca
gatgaaggtgtggttaccaatccaatgatagtacaaattatcaaggtttattcaccgaag
gacccagaaaaaatagttaatatgattggcaatggcaatattgacttgaagtataagcat
attttaccggccgatattattgcttcaatgaattacttttttaatttgcaagaagatatt
ggcaatacagatgatattgatcatttaggtaatcgacggattcgttgcgtgggtgaatta
ttggagaaccaatttagaattggtttatcgcggatggagcgtgttgttcgcgaacggatg
tcaattcaagacacagccacagtaactccccaacagttgattaatattcgaccagtagtt
gcttcaattaaagaattctttggtagttctcaattatcccagtttatggaccagactaat
cccctaggcgaattgactcataaacgtcgtttgtctgccttaggacccggtggtttgact
cgtgatcgagctgggtatgaagttcgtgacgttcactatacgcattatggtcggatgtgc
ccgattgaaacacctgaaggacctaatattggtttgattaatagtttgtcttcttatgct
cgaatcaaccaatatggttttattgaaacaccttatcggcgtgtttcttggaccactcac
aaagttacagataaaattgattatttaactgctgatgaagaagataattatgttattgct
caggctaactcgccattaaatgatgatggttcgtttgttaataacgttgttatggctcgt
agtaagagtgataatattgaaatttcagttgataaagttgattacatggatgtttcgcca
aaacaagttgttgctgttgcgactgcatgtattcctttcttggaaaatgatgattctaac
cgtgctttgatgggtgctaacatgcagcgtcaggcggttccactgattgatccccatgca
ccactggttggtacagggattgaatataaagcagcacatgattctggggttgctttgatt
agcaaacatgatggaacagttgaatatgttgatgctcgagaaattcgagtaagacgcgat
gatggtacacttgataggtacaaattaatgaaattccgtcgctcaaatggtggtaaaaac
tacaatcaacgtccgattgttcaagttggagatcatgtcgacaatgacgaagttttagct
gatggcccatcaatggaaaatggtgaattagctttgggtcaaaacccattaattgctttt
atgacgtgggatggctacaatttcgaagatgcgattgcgattaatgaacgcttagttaaa
gaagatgtgtatacttctattcatattgaagaacatgaatcagaagctcgtgataccaag
ttagggccggaagagatgactcgtgaaatccctaatgttggtgaagatgctttgaaagat
ttagacgaattcggtattattcggattggtgctgaagttcatgatggagatatcttagtt
ggtaaggtaacacctaagggagttactgaattgtcagctgaagaacgtttgttgcatgct
atttttggtgaaaaggctcgtgaagttcgtgatacttctttgcgcgtacctcatggtggc
ggcggaattgttcaggatgttaaaatctttacacgtgaagctggtgatgaattatcacct
ggtgtcaatatgatggtacgagtttatattgcccagaagcgtaagattcaagttggtgat
aagatggccggacgtcatggaaacaaaggtacagtttcaattgtaattccagaagaggat
atgccatttatgcctgatgggactccggttgatatcatgttgagtccaatgggtgttcct
tcacgtatgaatattggtcaggttttggaacttcatttaggaatggctggccgcaagtta
gggattcatattgcttcacccgtttttgatggtgcacgtgatagtgatatctggtcagct
ttaaaagaggccggcgtttctagtgatggtaaatcagttctttatgatggtcgaactgga
gaaccgtttgataatcgaattgcagttggcgttatgtactatatgaagttagctcatatg
gttgatgataagattcatgctcgttcaattgggccatactcattagttacacagcaacca
ttaggtggtaaagcacaatttggtggtcagcgttttggtgaaatggaagtttgggcttta
gaagcatatggtgctgcttatacattgcaagaaattttaacttataaatctgatgatgta
gtgggtcgagttaagacttatgaagcaattgttaagggtgaaccgattcctaagccaggt
gtacctgaatcgtttagagttttggttaaggaacttcaatcattaggacttgatatgaaa
gttctagattctgacaaaaaagagattgagttgcgagatatggacgacgaggacgatgag
gtcatgaatgttgatgctttgagcaaattggctaaacaacaggctgaaaagaaagcacaa
gctgaagctgacagtccagcgacagaaatgacagacacagaagctaaaactgaaaattag

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