Liquorilactobacillus nagelii: BSQ50_01235
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Entry
BSQ50_01235 CDS
T06235
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lng
Liquorilactobacillus nagelii
Pathway
lng03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BSQ50_01235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lng03021
]
BSQ50_01235
03400 DNA repair and recombination proteins [BR:
lng03400
]
BSQ50_01235
Enzymes [BR:
lng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BSQ50_01235
Transcription machinery [BR:
lng03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BSQ50_01235
DNA repair and recombination proteins [BR:
lng03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BSQ50_01235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
PH_4
Motif
Other DBs
NCBI-ProteinID:
AUJ31302
UniProt:
A0A3S6QT32
LinkDB
All DBs
Position
280481..284155
Genome browser
AA seq
1224 aa
AA seq
DB search
MIDVNKFDSMQIGLASSDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVTEPGNTPLEKKQLLTEREYREKREKYGKEFQASMGAEAIRTLLK
DVDLAKECEELKEELKDATGQKRTRAVRRLDILEAFLQSGNRPDWMVMDAIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPKLRMNQMGIPHE
MALELFKPFMMKELVKRGMASNIKNAKRKIERRDEDIWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVDGKSMRLHPLACEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
APKDGKPIVTPSQDMVIGNYYMTVEEPNREGEGMVFKDVNEVRTAYLNNYVHLHTRIGLQ
TASLAAAGKPFTDWQKQRVMVTTVGKAIFNEILPVDFPYLNEPTADNLTDKTPDKYFVEP
GTDIPEYIIDQPLVGPFKAGFLSDIIAEVYKKFKVTATSELLDRIKNIGYYESTRSGLTV
GIADVTDLKEKPAIIDNAHKEVATVAKQFRRGLITEDERYERVIAIWNNAKDQIQDKLVQ
NMNPKNPIQMMSDSGARGNISNFTQLAGMRGLMAAPNGKTMELPIVSNFREGLSVMEMFI
STHGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREKDCGTDRGLDVMAIREGNEMIEP
LYDRILGRYAMKSVKDPQTGKLIVASNEMIDEDKAQAIIAAGIKKVTIRSAFTCNTVHGV
CEHCYGRNMATGDEVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQE
IFEARNPKGLAKISEVTGEIDSVEENPAERTKTVTVKGETDTRTYSLPFTSVLKVAEGDK
IHRGEALTVGSVDPKELIKVRDVLSTENYILREVQKVYRMQGVEISDKHIEVMARQMLRK
IRVMDPGDTDLLPGTLMDINDFKEQNYKTLIKGSIPATARPVLLGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKNDPLIGLKENVIIGKLIPAGTGMSVYRQIKPKEIGGVSQSVYS
ISDLEKKMKDQEADNQTIAPSSDK
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtcaataagtttgacagtatgcagattggtttggcttcttcagacaaaatc
cgcagctggtcttatggtgaagtaaaaaaaccagaaacgatcaattatcgaacacttaag
ccagaaaaagatggcttgtttgacgaaagaatttttggtcctacaaaagattgggaatgc
gcttgtggaaaatataaacggattcgttataagggaatcgtttgtgaccgttgtggcgtt
gaggtaactcgttctaaagttcgaagagaacgaatgggtcatatcgaattggcagcccca
gttacgcatatctggtatttcaagggaattccgagtcggatgggcttagttttggacatg
agtccccgtgctcttgaggaaattatctatttcgcttcttatgtggttactgagccaggt
aatactcctttagagaaaaaacagttgttaactgaaagagaatatcgtgaaaaacgtgag
aagtatggtaaagaatttcaagcatcaatgggtgctgaagcaattcgaactttattaaaa
gatgttgacctagccaaagaatgtgaagaattaaaggaagaactaaaagatgctactgga
caaaaacggacacgagcagttcgtcgattagatatcttagaagctttcttgcaatctggt
aatcgaccggactggatggtaatggatgctattccagttattccaccagatttacgtcca
atggttcaattggaaggtggtcgttttgcaacttcagatttgaatgatttgtatcggaga
gtcatcaaccgtaacaatcgtctgaaacgtttgttagatttgaatgcaccaggaattatt
gttcaaaatgaaaaacgaatgctgcaagaagctgtagatgcgctgattgataatggccgc
cgcggacgtccagtaactggtccagggaaccgaccattgaagtcactttcacacatgtta
aaaggaaagcaaggtcgtttccgccaaaacttattaggtaagcgtgttgattactctggt
cgttcggttattgatgttggccctaagctaagaatgaatcagatgggaattccgcatgaa
atggcattggaattattcaagccattcatgatgaaagagttagttaaacgcggaatggct
tcaaatatcaaaaatgctaagcgtaagattgaacggcgtgatgaagatatttgggatgtt
ttagaggaagttatcaaagagcatccagttttgttaaatcgagcacctaccttgcatcgt
ttgggtattcaggctttcgaaccagtattggttgatggtaaatctatgagattgcaccca
ttagcttgtgaagcttacaatgctgactttgatggagatcagatggcgattcatgttcca
ttatcagatgaggcgcaagctgaggcccgactactaatgttggcagctcaccacattttg
gcaccgaaagatggtaaaccgattgtaactccttctcaagatatggttattggtaactat
tacatgactgttgaggaaccaaaccgtgaaggtgaagggatggttttcaaagatgtcaat
gaagtgcggacggcttatttaaataattatgttcatttgcatacacgaattggtctacag
acagcttcattagctgcagctggaaaaccattcactgattggcaaaaacagcgagttatg
gtaacaacggttggtaaagcaatttttaatgaaattttaccagtagattttccatacctg
aatgaaccaacagcagataatttaactgataagactccagataaatattttgttgaacct
ggtacggatattcctgagtacattatagatcagccattagttggtccatttaaagctgga
tttttaagtgatattattgctgaagtttacaagaaatttaaagtaacggctacttctgaa
ttgttggatcgaattaaaaacattggttattacgagtcaactcgttctggtttaacagtg
ggaattgctgatgttactgatttgaaggaaaaaccagcaatcattgataatgcacataag
gaagttgcaactgttgctaagcaatttcgccgaggactgattactgaggatgaacgttat
gaaagagttattgctatctggaataatgccaaagatcagattcaagataagcttgttcag
aacatgaaccctaaaaatccaattcaaatgatgtcagactcaggagctcgtggaaatatt
tctaactttacacagttggctggaatgcgtggcttgatggctgcacctaatggtaaaact
atggagttaccaatcgtttctaacttccgtgagggattatctgttatggaaatgttcatt
tccactcatggtgctcgtaaaggaatgactgatacggccctaaaaactgctgattcaggt
tatttgactcgtcgtttagttgatgttgcacaagatgttattattcgcgaaaaggattgt
ggtactgatcgtgggttagatgtaatggctattcgcgagggcaacgaaatgattgaacca
ctttatgatcgaattttaggccgctatgcgatgaaatcagttaaagatccgcaaactggt
aaattaattgtagcgtctaatgaaatgatcgatgaagataaggcgcaagcaattattgct
gctggaattaaaaaggttacaattcgctcagcgtttacttgcaatacggttcatggagtt
tgtgaacattgttatggtcgcaacatggcaactggtgacgaagttgaggttggtgaagct
gttggaactgtagcggctcagtcaatcggtgaaccaggtactcagttaacaatgcgaact
ttccatactggtggtgttgccggagatgatattacccaaggtttgcctcgtgttcaagaa
atttttgaggctcgtaatcctaaaggtttggcaaaaatttctgaagttaccggtgagatt
gattcagtcgaagaaaacccagctgaacggactaagaccgtgacagttaagggtgaaact
gacactagaacctatagtttaccatttacttctgttttaaaagtagctgaaggcgataag
attcatcgtggtgaagcattaactgttgggtcagttgatcccaaggaactgattaaagtt
cgtgatgttttatctactgaaaattacattttgcgtgaagttcaaaaggtttaccgcatg
cagggtgtggaaatttctgataagcatattgaagtaatggcacgacaaatgttgcgtaag
attcgagtaatggatccaggagatactgacttgcttccaggaaccttaatggatattaat
gatttcaaggaacaaaactataagaccctaatcaagggaagtatcccagcaactgctcga
ccagtcttgttagggattactaaagcctcattggaaacaaatagtttcttatcagctgct
tccttccaagaaacaacacgtgtcctgacggatgctgcaattcgtgggaagaacgatcct
ttaattggtttgaaggaaaatgttatcatcgggaagttgattcctgctggaacgggaatg
tccgtttatcgtcaaatcaagccaaaagaaattggtggggtttcacaaagtgtctattca
atttctgatttggaaaaaaagatgaaggatcaggaagctgataatcagacaatcgctcct
tcatcagacaaataa
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