Lepisosteus oculatus (spotted gar): 102684059
Help
Entry
102684059 CDS
T07349
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
102684059 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
loc03021
]
102684059 (polr1a)
Enzymes [BR:
loc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
102684059 (polr1a)
Transcription machinery [BR:
loc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
102684059 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
YceG
Motif
Other DBs
NCBI-GeneID:
102684059
NCBI-ProteinID:
XP_015200528
Ensembl:
ENSLOCG00000010881
UniProt:
W5MYA4
LinkDB
All DBs
Position
LG4:43678091..43723373
Genome browser
AA seq
1711 aa
AA seq
DB search
MLFAKDAPWRRLEGMSFGIYSTDEIRKLSVKTITNPRFLDNVGNPATNGLYDLALGPADS
KEVCTTCMQDFNKCPGHLGHIELPLPVYNPMFFDKLYLLVRGSCLSCHMLTCSRAAVHLL
LNQLRVLEAGALNAVYDLEAELNRYLEGNVSASGVEIQEVLEDYTKKILRTAIGYSSPVK
NVCEIKNNLISNFWKLHVKSRKCPNCKTGRSVVRKEHNSKLIVTLPSSVHKASKTGEANQ
KETEVINEAQLGKRGYLTPSTTKEHVLRLWENEGFFLKYLFSGLEVYENSKSCFNPDVFF
LENLVVPPSRYRPINRLGDQMFTNGQTVNLQAVMKDNTVIRKLLALMAQEKEKALEHPET
ETAEALEVESNQTDRAFLSSIPGQTLTDKLYNVWIHLQSHVNIVFDSDMDKLMGDKFPGI
RQMLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNV
KELRQAVINGPDVHPGASMVISEDGSRTVLSSTNRTQREAIAKQLLTPCTGPQRMSMKIV
NRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHF
PQSELGRAEAYNLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYMELVY
RGLTDKRGRVRVLPPAVLKPCALWTGKQVVSTLLINVIPEKHLPLNLIGKAKIPSKAWIK
EPPRPVPGYNPDSMCESQVIIQDGELLCGVLDKAHYGSSAYGLVHCCYELYGGETSGKLL
SCLARLFTAHLQLYRGFTMGVEDILVKPGANKKRKKIIVESTECGAKAVRAAFNLPETVP
ESEARDKWHDAHLSPDQRDFNMVDLKFKEQANLVSNGINKVCMPLGLHRRFPENNLQLMV
QSGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDVSPRAGGFVSGRFLTG
IKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFL
YGEDGLDIPKTQFLQPRQFPFIRDNYEVIKKSKCLDEALSKMDSEASSKHFRAIQKWKTK
HENSSPRQGAFLLFSQKKLAKLQAHCEQGSLVNSRTLATQQLIERWYSLDKEGHRKYARK
TERCPDPCLAVHRPDISFGSVSETFESIVDSYLSDYQAQQSSADCEKSLSVESLKSLLHL
KWQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSS
IKTPMMSIPVLNTKKALKKVKKLRKKLTRVCLSEVLQRVDVKESLSVQEKLKKSRVYQVT
FHFLPPERYQHDKPLSPKQILHFMETRFFRILLEAIRKRSLKLASLNSVNTSKATQRDLH
DSEEPQAEDDREGEGEEDARIVDAEADEGDADATDTRRRQKQEEEVDYDSEEEGDNDEAN
ELQEEEEGPEGRQENEEEMETGQVPPQSTAALPAAKRKAVKPFADTELDEVRINTVLGTS
SSIESYRYDTEQGLWCEVTLNLPVTKVYFDLTSLIASQAQSAVVHETKGITRCLLNESTN
SRGEKELVLNTEGINLTEVCKYSDILDLKRLYCNDVHAMANTYGIEVALRVIEKEIKDVF
AVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGIKSNSSPLQQMTFETSFKFLKDATMLGA
YDELKSPSACLVVGKVVKGGTGLFDLKQPLQ
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgctgtttgctaaagatgcaccatggcggcgcctcgaaggcatgtcctttggaatatac
tccacagatgaaatcaggaagcttagtgtaaagacaatcactaatccccgttttctggat
aatgtagggaacccagcgaccaatggtttgtatgacttggcattgggccctgccgactct
aaggaagtctgcaccacctgcatgcaagacttcaacaaatgtcccggccacctgggtcat
atagaactgcctttgcctgtgtacaacccaatgttcttcgataaactgtacctgctggtc
cgaggctcctgcctgagctgtcacatgctgacgtgttctcgtgctgctgtccacctgctc
ctcaaccagctgagggtgctagaggcaggcgcccttaatgcagtgtacgacctggaggct
gagctgaacaggtacctggagggcaatgtgtcggccagcggtgtggagatacaggaggtg
ttggaggactatactaagaaaatcctgaggactgccataggctacagttccccggtaaag
aacgtttgtgaaattaagaacaaccttatcagcaatttctggaaacttcacgtgaaatct
agaaaatgtccaaactgcaaaactggtcgatcagttgtccggaaggagcacaacagcaag
cttatagtgaccttgccctcatctgtgcataaagcaagcaagacaggtgaagcaaatcag
aaagaaactgaagtaattaatgaagcccaactggggaagcgtggatatctgacgcccagc
accaccaaagaacatgtcctgcgactttgggaaaatgaagggtttttcctgaagtacctg
ttttcaggtttggaggtctatgagaactccaagagctgtttcaacccagatgtgttcttt
ctggaaaatctggttgtccctccgtccaggtatcgccccatcaaccgtctgggggatcag
atgttcacaaacgggcagacggtgaacctgcaggcagtgatgaaggacaacacggtgatc
cggaagctgctggccctgatggcacaggagaaggagaaggcacttgagcacccagagact
gagacagcagaggcgctggaggtggaatccaatcaaactgatagggccttcctaagcagt
atcccaggacagacgctcacagataagctgtacaatgtctggatccatctgcagagccat
gtcaacattgtgtttgacagtgatatggacaagctcatgggtgataaattcccaggaatt
cggcagatgctggagaagaaagagggtctcttccggaaacacatgatggggaagcgtgtg
gactacgcagctcgttctgtcatttgtccagacatgtacattggcacaaatgaaattgga
atacccatggtgtttgctaccaaactgacgtacccacagccggtcacgccctggaacgtg
aaggagctgcggcaggcggtcatcaacgggcccgacgtgcaccctggcgcctccatggtg
atcagtgaggacggctcccgcacggtcctcagctccaccaaccgcacgcagagagaggcc
atcgccaagcagctgctcacgccctgcaccggcccgcagaggatgtctatgaaaattgtc
aaccggcacattaagaacggtgatgtcctgctgctaaaccgacagcccacactgcacagg
ccctccatccaggctcactgtgcccgcatcctgcctggagagaaggttctgcggttgcat
tatgccaactgcaaagcctataacgctgactttgacggcgatgagatgaacgcacacttc
ccccagagtgagctgggcagggctgaggcctataatcttgtcagcactgaccaacagtat
ctggttcccaaggacgggaagcccttggcaggactgattcaggatcacatggtgtcgggc
accagcatgacaatacgcggctgcttcttcacacgagaccagtacatggagctggtttac
cgaggcctgacggacaagaggggcagggtccgcgtgctgccccccgcagtgctgaagcca
tgtgccctgtggacagggaaacaggttgtttctaccttgctgatcaacgtaattccagaa
aaacacctacccttgaacctcatagggaaagccaagattcccagtaaggcctggatcaaa
gagccaccacgacctgtcccaggctacaacccagactccatgtgtgagtcccaggtcata
atccaggatggagagctgctctgtggagttctggacaaggcccactatggcagctcggcc
tacgggctggttcactgttgctacgagctgtacggaggggagaccagtggcaaactgctg
agctgcctggcccggctcttcacagcccacctccagttgtacaggggcttcaccatgggt
gtggaagatatattggtaaagcctggagctaataaaaagagaaagaagatcattgtagag
tctaccgaatgtggggcaaaggctgtgcgagctgctttcaacctccccgagactgttccg
gaaagtgaggccagggacaagtggcatgatgcccacctcagccccgaccagcgagacttc
aacatggtggacctcaagttcaaggagcaggccaaccttgtcagcaatggcatcaataag
gtgtgcatgcccctgggtcttcacagacgtttcccagagaacaaccttcagctgatggtg
cagtctggggccaagggctccactgtcaacactatgcagatttcctgcttgctgggacag
attgagctggaaggacgccgccccccactgatgccatctgggaaatctctgccctgtttt
cagccttacgacgtgtcccctcgagcagggggctttgtgtccggcagatttctcactggg
attaaaccccctgagttcttcttccattgtatggctggtcgtgaaggtctggtagacaca
gctgtaaaaaccagtcggtctggttaccttcagaggtgcatcatcaagcacctggagggg
ctggtggtgcagtatgacctgactgtacgggacagcgatgggagtgtggttcagtttctg
tatggagaggacggcctggacatccccaaaacacagttcttacagcctcggcagttcccc
ttcatcagggacaactatgaggttatcaaaaaatccaagtgcttagatgaggctttatcc
aagatggactccgaggcttcatccaagcatttcagagcaatccagaagtggaaaaccaag
cacgagaacagctctccccgccagggagcctttctgctcttctctcagaagaagctggcc
aagctgcaggcccactgcgagcaggggtcactggttaacagcaggactctcgccacacag
cagctgatagagaggtggtattccctggacaaggagggccacaggaagtatgccaggaag
acagaacgctgtcctgatccttgcctggccgtgcaccggccggacatttccttcggctct
gtgtctgaaaccttcgagagcatcgtggactcctacctgtctgactaccaggcccagcag
agcagtgctgactgcgagaagtctctgtctgtggagagcctgaagtccttgctgcacttg
aagtggcagcgggcgctttgtgaccctggggaggctgtggggctcctggcggcccagagt
atcggcgagccgtccactcagatgacactcaacacctttcactttgctggcagaggagag
atgaacgtcacccttgggatccccaggttgcgtgaaatcctcatggttgccagttcttcc
atcaaaaccccaatgatgagtatccctgtgctcaacacaaagaaggccttgaagaaggtg
aagaagctcagaaagaagctgactcgtgtgtgtctgtcagaggtcctgcaaagagtggat
gtgaaggagtctctaagtgtgcaggagaagctgaagaaaagccgtgtctatcaggtcacc
ttccacttcctgcctcctgagcgctaccagcatgacaagcctctgtccccgaagcagatc
ctgcacttcatggagaccagattcttcaggatactcttggaagctataagaaaacggagc
ttgaagctggcatctctgaactctgtaaatacatccaaagcaacacaaagggatctccat
gactcagaagaaccacaagcagaggatgatcgtgagggtgagggtgaggaggacgccagg
attgtggatgcagaggcagacgagggagacgcagacgccacagacaccaggaggagacaa
aaacaggaggaggaggttgattatgacagtgaggaagagggagacaatgacgaagccaat
gagctgcaagaggaggaggaaggacctgagggccggcaggagaacgaggaggaaatggaa
acgggtcaggtgcctcctcaaagcactgctgctcttcctgctgcgaagaggaaggcagtg
aagccctttgcagacacagagctggatgaggtccggatcaacaccgttctgggaaccagc
tcctccattgagagctatagatatgacaccgagcagggactgtggtgcgaggttactctg
aacctccccgttaccaaagtgtactttgacctcacctctctgatagcatctcaggcacaa
agtgcagtggtgcacgagaccaaaggcatcacccgctgcctgctgaacgagtccaccaac
agcaggggagagaaggagcttgtgctcaacacggagggaattaacctgaccgaggtctgc
aagtacagcgatatcctggatttgaagaggctgtattgtaacgatgtgcacgccatggcc
aacacgtacggtatcgaggtggctctgcgggtcattgagaaggagatcaaagacgtgttt
gccgtctatggcattgaggtggaccctcgtcatttgtctctggttgctgactacatgtgt
ttcgaaggtgtttacaagcctctcaatcgttttggaataaagtcgaactcttccccactg
cagcagatgaccttcgagacgagcttcaaatttcttaaagatgcgactatgttgggtgcc
tatgatgagctgaagtcaccatcagcatgtctagtggttggtaaggtagttaaaggagga
acaggactctttgacctgaagcagccactccagtag
DBGET
integrated database retrieval system
