Lepisosteus oculatus (spotted gar): 102685020
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Entry
102685020 CDS
T07349
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X10
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102685020 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
loc03019
]
102685020 (cnot1)
Messenger RNA biogenesis [BR:
loc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102685020 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102685020 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
102685020
NCBI-ProteinID:
XP_006641455
Ensembl:
ENSLOCG00000006324
LinkDB
All DBs
Position
LG23:complement(12866933..12894508)
Genome browser
AA seq
2373 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDVLMDRIL
PDSGGIAKTMMESSLAEFMQEVGYGFCASLEECRAIIVQYGVREVTASQVARVLGMMART
HTALSDGIPLQSISAPGSGIWSDGKDKSDGSQVHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLQVVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMNPDIFC
FADYPCHNVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFNFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQIDPLSAMGSL
TIGGSAASHTQSMQGFPNLSSAFSNPQSPAKAFPALTNPSQSTPFGGIGGLSSQLPGSLG
AGTLTGIGTGGIGLPAVNSDPFGQRKMSASGLNPPTFQQSKMRPSDLSQVWPEANQHFSK
EIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFF
PQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKSFGSKMYYFGIAALDRFK
NRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQA
QAQVPPKAPIPGQVSTMVTTSTTTTVAKTTTITRPTGVSFKKDVPPSINTTNIDTLLVAT
DQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIE
PNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMI
TLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSMIFRPQNPWTMAI
MNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKNLEEQLSAPKKE
AKPPEEMLPIVTTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHINYPNIPLL
QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHH
MMRNLTAGMAMITCREPLLMSIATNLKNSFTAALRAPTPQQREMMEQAAAQIAQDNCELA
CCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGG
VDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQAWAADDVAQIYDKCIADLEQHL
HAIPPALAMNPQTQALRSLLESVVVARNSRDAIAALGLLQKAVEGLLDATSGADADLLLR
YRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYD
LHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRANAP
EGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLY
HSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA
SAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQT
EFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELIS
HRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLL
HDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPR
ILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVLYVG
TQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHY
FSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHDFV
HCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7122 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgacacggc
cccgaggcagacaggcatctactacgctgtctattctcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagacacagtttctgatccaggagtgcgcgtcg
ctcatcaccaagccgaactttatctcgacgctttgctacgccattgacaaccccttacac
tatcaaaagagtttgaagccctcaccacatttgtttactcagttgagtaaagtcctcaaa
ctaagcaaggttcaggaggttatttttggccttgctttgctgaactcttccagctcagat
ctccgagggtttgctgcccagtttgttaaacagaagctccctgatcttctgcgctcatac
gtggacgcagacctcgggggtaaccaagaaggtggcttccaagatattgcaatagaggtc
ctgcacctgctcctctcccatctcctttttggacagaagggagcctctggggttggacag
gaacagattgacgccttccttaagactctgtgcagagattttccgcaggagcgctgtcct
gtggtgctcgcaccacttctttaccctgaaaaacgggacgttctgatggacaggatccta
ccagattctggagggattgcaaagacaatgatggagagttcgcttgcagaatttatgcaa
gaagttggctatggcttttgtgcaagtcttgaagaatgccgtgctataatcgtgcagtat
ggggtccgggaggttacagccagccaggtggccagggtcctggggatgatggctcgcaca
cacacagcattatctgacggtattcctttacagtctatatctgctcctggcagtggaatc
tggagtgatggcaaggataagagtgatgggtctcaggttcacacttggaatgtggaagtt
ttaatcgatgtcgtcaaagaagtgaaccccaatttaaacttcaaagaagtaacttatgag
ctggatcatccggggttcattattcgagacagtaaaggtctgcaggttgtcgtatatggc
atccagaggggcttgggaatggaagtgtttcctgtcgatcttatctataggccttggaaa
catgcagagggccagttatcatttattcagcattccttaatgaacccggatatcttctgt
tttgctgattacccctgtcacaatgttgctattgacatactgaaggctccccctgaggat
gataaccgtgagattgcaacttggaaaagtctggaccttgttgaaagcttgctacgtctg
tcagaagtgggacagtatgagcaagtgaagcagctcttcaacttccccatcaagcactgc
cctgacatgctggtactggccttgctacagatcagcacctcctggcatacacttcgccat
gaacttatctccaccttgatgccaatcttcttgggcaatcaccccaactctgccattatt
ttgcactacgcatggcacggacagggacaatccccctccatccgtcagcttatcatgcac
tcgatggcagagtggtacatgagaggggagcagtatgatcaggccaaactctcccgcatt
ctggacgtggctcaggacttgaagtctctatcgatgctgctaaatggtactccattcgcc
tttgttattgaccttgctgcacttgcctctcgccgagaatacctcaaacttgacaaatgg
ctgactgacaaaataagagagcatggggaacctttcattcaggcttgtgtgacattctta
aaaaggcgttgcccttctattatgggaggcctggctccagagaaggatcaacctaaaagt
gcacagctcccccctgaaacactggctaccatgctggcatgtctacagtcctgtgcaggg
agtgtgtcccaggagttgtcagagaccatcctgaccatggtagcaaactgtagcaatgtc
atgaacaaagctcgacagccaccaccgggtgtaatgccaaaggggcgtgctcccagcaca
agcagcttggatgctatttcccctgtacagattgaccctctgtctgccatgggttcactg
actataggaggatctgcagcatctcacacacagagcatgcaaggatttccaaatctgagt
tcagctttcagcaacccgcagtctccagcaaaggcttttccagcccttactaacccaagt
cagagtacaccatttggtgggattggtggcctttcttcacagcttccaggttctttaggt
gctggcactttgacaggcatagggactggaggaataggattgccagcagtgaacagtgat
ccttttggacagaggaagatgagtgcctcggggttaaaccctcccaccttccagcagagt
aagatgaggccttctgacctttctcaggtgtggcctgaagcaaaccagcactttagcaaa
gagattgatgatgaggccaatagttacttccagcgtatttacaaccatccaccacaccct
actatgtcagttgatgaggtgctagagatgcttcagaggtttaaggattccaatattaaa
cgggaacgtgaggtgttcaactgtatgctgcgaaacctgtttgaagaataccgcttcttc
cctcagtaccctgacaaggagttgcacataacagcctgcctctttggtggaatcattgag
aaaggactggtcacctatatggctctggggctggccttgcgctatgttcttgaagcttta
agaaaatcttttggatctaaaatgtattactttggaattgctgctctcgacaggtttaaa
aatagactgaaggactatccccagtattgtcagcacttggcttccattgctcactttctg
cagttccctcatcatttacaggagtatatagagtacgggcaacagtcgcgagaccctcct
gtgaagatgcagggatctatcaccacaccaggcagccttgctcttgcacaagctcaggcc
caagcacaggttcccccaaaagctcccatcccaggacaggttagcactatggtaactaca
tctaccacaaccactgttgccaaaaccactaccattacccgccccactggagtcagcttc
aagaaggatgtgccaccctctataaacacaaccaatattgacacactgttggtggcaaca
gaccaaacagagaggatagtggaacctcctgaaaatgtccaagagaagatcgctttcatc
tttaacaatctgtcacagtccaatatgacccagaaggttgaagagctgaaagagactgta
aaagaagagtttatgccttgggtgtcgcagtaccttgtaatgaagagagtcagtatagag
cctaatttccatagtctttactccaatttcctggatacactaaaaaaccctgaatttgtg
aaaatggtcctgaatgagacatacagaaacattaaggtgctgctgacttcagataaggca
gcagcaaacttctctgatagatcccttttgaagaatctgggacactggcttggcatgatc
actctggcaaaaaacaagcccatcctgtatacagatttggaattaaaatccttgttgctg
gaagcctatgttaagggacaacaagagcttctgtatgtggtcccatttgttgccaaagtc
ttggaatccagtgttaggagcatgattttcagaccacagaacccttggacaatggccatc
atgaatgtattggcagaacttcatcaggagcatgatttgaagcttaacttgaagtttgag
attgaggtgctgtgcaagaatctgtctctggacatcaatgacctaaagcctggaaaccta
ttgaaggacaaagaaaaactgaagaacctagaagagcagctatctgcaccaaagaaagaa
gccaaaccacccgaggaaatgctgcctattgttacaactgctgctccatctactcctgcc
acaacaacaacctgcacagctactggtccacccacacctcagttcagttatcatgacatt
aatgtctatgctctggcaggattagctcctcacattaattatcctaatatcccattgctg
caggcccacccccagctgaaacagtgtgtgaggcaggcaatagaaagggctgtgcaggaa
cttgtccatcctgtagttgacagatccatcaagattgccatgacaacatgtgaacagatt
gtcaggaaggactttgccttggactcggaggagtcccgcatgcgtgtagctgcccaccac
atgatgagaaacctgacagcaggcatggccatgatcacctgcagggagcctctgctgatg
agcattgccaccaacttgaagaacagttttacagctgccctcagggctccaacaccacag
cagagggaaatgatggaacaagcagctgcacagatagcccaagacaactgtgaactggca
tgctgcttcatacagaaaaccgcagttgagaaagcaggtccagagatggacaagaggctg
gccactgagtttgaactgcggaagcatgccagacaagagggacgtcgctactgtgaccca
gttgtactgacataccaggcagaaaggatgccagaacaaatccggctgaaggttggaggt
gtggaccctaaacagctggctgtttacgaggagtttgcccgcaacgttcctggatttctt
cccagcaatgacttgtctcaacccactggtttccttgctcaacccatgaagcaagcctgg
gcagctgatgatgtcgcccagatctatgacaaatgtatcgctgaccttgagcagcacttg
catgcgatcccccctgccttggcaatgaacccacagacacaggctctgcgaagccttctg
gagtccgtggtggtggcccgaaactcgagagatgccattgccgcgcttggcttactgcag
aaggctgtggaaggtttgcttgatgccacaagtggtgccgatgcagatctcctgctccgt
taccgtgaatgccacctcctggtcctcaaggctctccaggatggccgagcttacggtccg
cagtggtgcaacaagcagatcaccaggtgtctgattgaatgccgtgacgagtacaagtac
aatgtagaagctgtggagctcctgataagaaatcacttggtcaacatgcagcagtatgac
ctgcatctagcacagtcgatggagaacggcttgcattacatggccgtggcctttgcgatg
cagctggtgaagttgctgctggtggatgagcgcagtgtgagccacatcacagaagcagac
ctgttccacaccattgagaccctcatgagaaccagtgcccactcgagggcaaatgccccg
gagggtttaccacaactgatggaagttgtccgatcaaactacgaagcaatgatagaccga
gctcatggaggccccaactttatgatgcactctggaatatcgcaggcctccgagtatgat
gaccctcctggcctgagggagaaggcagaatacctgctgagggaatgggtcaatctttac
cactcagcggctgctggccgggacagcaccaaggccttttctgcttttgtaggacaaatg
caccaacaggggatcctgaagactgatgacctgataacccgatttttccgtctgtgcaca
gagatgtgtgtggagatcagttaccgtgcacaagccgagcagcaacacaacccagctgct
agtgctgcaatcattcgtgccaagtgttatcacaaccttgatgcttttgtcaggctcatt
gcacttcttgttaaacattctggggaggctaccaacacagtcaccaagattaacttactg
aacaaggttcttggtattgtggttggagtcctcattcaggaccatgatgtccgtcagact
gagtttcagcagttaccttaccaccgcatcttcatcatgttgctgttggaattgaatgca
ccagaacacgtgttggaaaccattaacttccagacattaactgctttctgcaacacgttc
catattctgaggcccaccaaagctcctgggtttgtctatgcttggctagaacttatatct
caccgcatattcattgcaaggatgttggcgcacacaccacaacagaagggttggccaatg
tatgcccagttgctcatcgacctgttcaagtatctggcaccctttttaaggaatgttgag
ctcaacaagcctatgcaaattctttacaagggtactctgcgtgtgctgctggtgctcctt
catgattttccagagtttctctgtgattatcattatggtttctgtgatgttatcccaccc
aactgcatccagttacggaacttgatcctcagtgctttccctcgcaacatgaggcttcct
gacccatttactccgaatctgaaggttgatatgctcagtgagattaatattgctccccgt
attctcactaacttcactggagtgatgccatctcagttcaagaaggatttggactcctac
ctgaagactcgctcccctgtcacttttttgtcagagctccgcagcaacctgcaggtctca
aatgagccaggtaatcggtacaacattcagcttataaatgcattggtgctgtatgtggga
actcaagcgatcgctcacattcacaacaaaggtagcacaccatctatgagcaccatcacc
cactcggcccatatggacatcttccaaaacttggctgtggacctggacactgagggacgg
tacctgttcctcaatgcgattgccaatcagttgcggtatcctaacagccacactcactac
ttcagctgcaccatgctttacctgtttgcagaagcgaacactgaagcaatacaggagcag
attaccagggttctgctggagaggttgattgtgaacaggccacacccatggggtctgctt
ataactttcatcgaactcatcaaaaatccagccttcaagttctggaaccatgattttgtc
cactgtgcaccagagatcgaaaagttgttccagtcggtggctcagtgttgtatggggcag
aagcaagcacagcaagtgatggaaggcactggtgccagttag
DBGET
integrated database retrieval system
