Lepisosteus oculatus (spotted gar): 102695657
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Entry
102695657 CDS
T07349
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102695657 (snrnp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102695657 (snrnp40)
Spliceosome [BR:
loc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102695657 (snrnp40)
Complex C
U5 SnRNP specific factors
102695657 (snrnp40)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
Cytochrom_D1
WD40_like
PQQ_2
WDR54
Motif
Other DBs
NCBI-GeneID:
102695657
NCBI-ProteinID:
XP_006631363
Ensembl:
ENSLOCG00000005258
UniProt:
W5MD89
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All DBs
Position
LG6:complement(9989152..9998435)
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AA seq
350 aa
AA seq
DB search
MIEQKKRKGVGPTEMALVPTNKRPRNELVAAAQSQQLMQMGPPRSSSLQAPIMLLSGHEG
EVYCCKFHPNGATLASAGYDRLILLWSVYGDCDNYATLKGHSGAVMELHYNTDGSLLFSA
STDKTVAVWDSETGERIKRLKGHTSFVNSCYPARRGPQVVCTGSDDGTVKLWDIRKKAAV
HTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYTMQGHGDSLTGLSLSSEG
SYLLSNSMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSADGSKIAAGSADR
FVYVWDTTSRRILYKLPGHAGSVNEVVFHPEEPVVLSGSSDKRLYMGEIQ
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacagaagaagaggaagggagtagggccaacggagatggctctggttccgacg
aacaagagaccaagaaatgagctggtggccgcggctcagtcccagcagctcatgcagatg
ggccccccacgaagttccagtttgcaggctcctatcatgcttctcagtggccatgaggga
gaggtctactgctgcaagtttcaccccaatggggccacgctggcatccgcaggctacgac
aggctgatcttgctatggagtgtttatggggattgtgacaattacgccactctgaaaggc
cacagtggagccgtcatggagttgcattataacacagatggcagcttgctcttctcagcc
tccacagacaagacagtggccgtgtgggacagcgagacaggggagcggatcaagaggctg
aaagggcacacgtcgttcgtgaactcctgttacccagccagacgagggccgcaggtggtc
tgcacaggcagcgatgatggcacagttaaactttgggacattcggaagaaggcagctgtg
cacaccttccagaacacgtaccaggtcctggctgtcaccttcaatgacaccagcgaccag
atcatctcaggagggattgacaatgacattaaggtgtgggacctgcggcagaacaagctg
atatacaccatgcagggacacggggactctctgactggcctgagcctcagctcggaaggc
tcctacctgctctccaactccatggacaacacagttcgagtctgggatgtccgcccattc
gcaccaaaggaaaggtgtgtgaaaatattccaaggaaatgttcataactttgaaaagaat
cttttgaggtgctcatggtccgctgatggaagcaagattgccgcaggctcagcagacagg
tttgtgtatgtgtgggacaccacttcccggagaatcctgtacaagctgcctggccatgct
ggctctgtcaacgaagtggtcttccaccccgaggagcccgttgttctttcagggtcaagt
gacaagcggctgtacatgggagagatccagtag
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