Lepisosteus oculatus (spotted gar): 102698834
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Entry
102698834 CDS
T07349
Symbol
prpf19
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
loc
Lepisosteus oculatus (spotted gar)
Pathway
loc03040
Spliceosome
loc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
loc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102698834 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
102698834 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
loc03041
]
102698834 (prpf19)
04121 Ubiquitin system [BR:
loc04121
]
102698834 (prpf19)
03400 DNA repair and recombination proteins [BR:
loc03400
]
102698834 (prpf19)
Enzymes [BR:
loc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
102698834 (prpf19)
Spliceosome [BR:
loc03041
]
Complex B
Other components
Prp19 complex
102698834 (prpf19)
Complex C
Prp19-CDC5 complex
102698834 (prpf19)
Ubiquitin system [BR:
loc04121
]
Ubiquitin ligases (E3)
U-box type E3
102698834 (prpf19)
DNA repair and recombination proteins [BR:
loc03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
102698834 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_WDR5
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Prp19
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_EML
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_1st
EIF3I
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_WDR41
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_Vps41
WD40_RFWD3
RMC1_N
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
102698834
NCBI-ProteinID:
XP_015209421
LinkDB
All DBs
Position
LG9:complement(17201628..17210964)
Genome browser
AA seq
420 aa
AA seq
DB search
MLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLVVPQA
VPASQPTVAGGGEPMEVSEQVGMTPEIIQKLQDKATVLTTERKKVSLRGHSVFPEESLCS
AAVVAHEDLPSLLLLQGLHSASIPGILALDLCPTDTNKVLTGGADKNVVVFDKNAEHIMA
TLKGHTKKVTSVIYHPSQVLLPSWLPDSGVLDWTGPNTSCLTXRKRAARGAVLLTVPLSS
LLPQYWAFSDIQTGRVLTKVTDEAAGCALTCAQFHPDGLIFGTGTADSQIKIWDLKERTN
VANFPGHSGPVTAIAFSENGYYLATGAQDCSVKLWDLRKLKNFKTITLDHSYEVKSLIFD
QSGTYLAVGGSDIRVYICKQWSEVLNFTEHTGLVTGVAFGQHAQFLTSSGMDRSLKFYSL
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacagcttcactctcagacagcagctgcagacgactcgtcaggagctgtctcac
gccctgtatcagcatgatgccgcctgccgtgtcattgcccggctcaccaaggaggtcacc
gctgccagagaagccctggcgacgctgaagcctcaggcgggattggtggttccacaggca
gtgcccgcctcccagcccactgtcgcaggaggtggggagcccatggaagtcagcgagcaa
gtgggaatgactccggagatcatacaaaagctccaagacaaggccactgtcctgaccacc
gagagaaagaaggtcagtctgcgaggacactctgtctttccggaggagtctttgtgttca
gctgcagtggtggcacatgaagacttaccatctctccttctcctgcagggcctgcacagc
gccagcatccctggtatcctggccctggatctgtgccccacggacaccaacaaagtgctc
acaggtggcgctgacaagaatgtggttgtgtttgacaagaatgctgagcacatcatggct
acactgaagggacacaccaagaaggtcaccagtgtcatctaccacccgtcacaggtctta
ttgccatcttggcttccagactccggtgttttggactggaccggtccgaacacttcatgc
ctcacttgacgtaagcgagcagcacgtggcgcagtcttgctcaccgtacctctgtcctcg
cttcttcctcagtactgggcgttctccgatatccagaccggccgagtgctgaccaaggtg
accgacgaggctgctggctgtgccctgacctgcgcccagttccaccctgacgggctgatc
ttcggcacgggcacggccgactcccagatcaagatctgggacctgaaggagcgcaccaac
gtggccaacttccccggccacagcggccccgtgacggccatcgccttctccgagaacggc
tactacctggccaccggcgcgcaggactgctccgtcaagctctgggatctgaggaagctg
aagaacttcaagaccatcacgctggaccactcctacgaggtgaagtccttgatatttgac
cagagcggaacttacttggcagtaggagggtctgacatcagggtctatatctgcaagcag
tggtctgaagtcctcaacttcaccgagcacacaggcctggtgacaggagtggcctttggg
cagcatgcccagttcctaacctcctctgggatggaccgcagcctcaagttctacagcctg
tga
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