KEGG   Leishmania orientalis: 92358304
Entry
92358304          CDS       T10351                                 
Symbol
LSCM4_02338
Name
(RefSeq) hypothetical protein
  KO
K14406  cleavage stimulation factor subunit 1
Organism
loi  Leishmania orientalis
Pathway
loi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:loi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    92358304 (LSCM4_02338)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:loi03019]
    92358304 (LSCM4_02338)
Messenger RNA biogenesis [BR:loi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     92358304 (LSCM4_02338)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WDR55 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_TEP1_2nd Beta-prop_Aladin NBCH_WD40 CSTF1_dimer Beta-prop_DCAF4 LAL_C2 Tricorn_2nd
Other DBs
NCBI-GeneID: 92358304
NCBI-ProteinID: XP_067059922
UniProt: A0A836GNR3
LinkDB
Position
33:complement(91133..92773)
AA seq 546 aa
MFSPSGSRGSAGFAGRPGDTAPPPSSAAGRPHTEVMAGGSQPHRKRPRQGVLVDPLAREV
YQMVVRQLHHDGFLAAASAVCDATGVVVNNVEDEGDRLARVVAAGLSVSEMERRAEEEFY
LTQVVERYLSASKLYVPLSLSSRWSVGRRCLRMRERFISASLGGVVRDISFSPDGAHVTC
AGTNGLAAIFSLETIEDLSALDETRAANRARALDGSRDPGSSGSGETAPKGSAIRNANEI
TELSMVRRFHEHTQSVEVMRFHPTKPIVLSGGREGDLYLRDYAYPDSKVLLKVHDTVPIR
DASFHPSGEYIVVAANHHLPRLINVRTEKVLTPPGTYASSTAKTGPQWESEESGNAATSY
RPTDRGAQHSAALSSVCFAPDGRTMISTSLDGTWMLYDGVSGRVIYRAENAHSGVPVTSV
VYSRTGNIVLTAGMDSTARLWDLRRLHATSRNYQSPEVNSFGEPTKCDHRSIRAVFSANE
SHVHCHDSTLLAVHSYCVYTGAVASTLTTQPSFMQRGLAASPWANCIVTGGDDSRLRLWT
PAWLPS
NT seq 1641 nt   +upstreamnt  +downstreamnt
atgttttcgccgtccggctctcgaggttctgcgggtttcgcgggcaggcctggggatacc
gcgcccccaccgtcatcggctgctggccggcctcatacggaagtgatggcgggcggatcg
caacctcaccgcaagcgcccccgacaaggcgttctcgtggatccgctcgctcgtgaggtg
tatcagatggtagtgcgtcagcttcaccacgacggtttcctggccgctgcttccgctgtc
tgcgacgccaccggggtcgtggtgaataacgtggaagatgaaggtgaccgtctcgcacgg
gtagtggcggcgggactgagtgtgagtgagatggagcggcgtgcggaggaggagttttac
ttgacgcaggtggtcgagcgttatctcagcgcgtcgaagctgtacgtgcctctttcgctg
tccagccgctggtcggtgggacgtcgatgcctgcgcatgcgcgagcggttcatttcggct
tctctcggcggtgttgtgcgagatatctccttttctccggatggggcccacgtcacgtgc
gccggcactaatggtcttgcggccatcttttcccttgagacgatcgaggacttaagcgcg
cttgacgagacgcgtgccgcgaaccgcgcgagggcgcttgatggcagccgtgatcctggc
agctccggcagtggtgaaaccgctccgaaaggctctgctatccgcaacgccaacgagata
acagagctttcgatggtgcgccgatttcacgagcacacccagtccgttgaggtgatgcgt
ttccaccccaccaaacccatcgttctctccggcggccgcgaaggcgatctgtacttgcgc
gactacgcctatcctgactcgaaggtgttgctgaaagttcacgacaccgttccgattcga
gacgcgtcctttcacccgtctggggagtacatcgttgtggcggcaaatcaccatttgcct
cggctgattaacgtgcgcacggagaaggtgctcacaccccccggcacctacgcgtcctcg
acggctaagacagggccacagtgggagagcgaggagagcggcaatgcagctacttcgtac
cgcccgaccgatcgcggggcgcagcacagcgctgcgctgtcgtcggtgtgcttcgctcct
gacgggcggacgatgataagcacaagccttgatggtacctggatgctctacgacggcgtg
agcgggcgcgtgatctaccgcgctgagaacgcgcactctggcgttcctgtgacgagcgtt
gtgtacagccgaacaggcaacatcgtgctgacggcaggtatggactcaacggcacgcctg
tgggacctgcgccgactccatgcaacgtcgcgcaactaccaaagcccagaggtgaactct
ttcggcgagcccaccaagtgtgaccatcgcagcatacgagccgtgttctccgcaaatgaa
agccatgtgcactgccacgactccactcttcttgctgtgcacagctactgcgtttacacc
ggagcggtggcctccactttgaccacgcagccaagctttatgcaaagaggtctggcggcc
agcccgtgggccaactgtatcgtcacagggggtgatgacagtcgactgcgtctgtggact
ccagcgtggcttccgtcgtga

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